| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
Click here to switch to the map view.
The map label for this gene is 116871914
Identifier: 116871914
GI number: 116871914
Start: 532476
End: 533831
Strand: Direct
Name: 116871914
Synonym: lwe0494
Alternate gene names: NA
Gene position: 532476-533831 (Clockwise)
Preceding gene: 116871913
Following gene: 116871916
Centisome position: 18.92
GC content: 45.65
Gene sequence:
>1356_bases ATGGAAACAAATCAAATCTTAGAAACGATACGAATGATTGAAGAAGAGAAGTTGGATATCCGGACGATTACGATGGGGAT TTCTTTGCTAGATTGTATGGACGGCGACGGCGAAGTGGCTCGAAAGAAAATCTATCAAAAAATCGTCACCAAAGCGCGTA ATTTAGTTGCTGTTGGTGAAGCGATTGAATCTGAGTTTGGTATTCCGATTATTAATAAACGAATTTCTGTCACACCGATT GCTATTATAGCTGGCTCTAGCGCTGACACGGATTATGTAGAATTTGCTAAAACACTTGATGCAGCAGCAAAAGAAGTTGG CGTGAATTTTATCGGTGGTTATTCCGCACTCGTTCAAAAAGGTTACACGAAAGGCGATGAAATATTGATTCGCTCGATTC CGCAAGCTTTGGCTCAAACAGAGCGTGTTTGTTCATCGGTCAATGTTGGCTCGACTCGAACAGGAATCAATATGGATGCG GTTCGTCAAATGGGTGAAGTGATTAAAGAAACGGCGGACTTAACAGCCGATACACAAGGCCTAGGTTGCGCGAAACTCGT TGTATTTGCCAATGCTGTCGAGGATAATCCTTTTATGGCCGGGGCATTCCACGGTGTTGGTGAAGCGGACTGCGTTATTA ATGTTGGCGTCAGCGGACCAGGTGTGGTCAAACGTGCTATCGAAAAAGTAAAAGGCGAACCATTTGATATCGTTGCTGAA ACAGTCAAACAAACTGCTTTCAAAATCACTAGAATGGGTCAACTCGTTGGTCAAGTCGCTTCTGAAAAACTAGGTGTTCC TTTTGGGATTGTCGATTTATCACTAGCGCCAACCCCGGCGATTGGCGATTCGGTCGCGCACATTTTAGAAGAGATGGGGC TTGAAATGGTCGGGACGCATGGCACTACAGCGGCACTCGCACTTTTAAATGATGCAGTGAAAAAAGGCGGCGTCATGGCT TGCGGACATGTCGGTGGTTTATCCGGCGCATTTATTCCAGTTTCTGAGGACGCTGGTATGATTGAAGCCGTGCAACAAGG TGCGCTCAATCTTGAAAAATTAGAGGCAATGACGGCAATTTGCTCGGTTGGTCTTGATATGATTGCCGTTCCAGGTGACA CAACTGCCGAAACATTAGCAGCAATGATTGCGGATGAAGCCGCGATTGGCGTAATTAACAACAAAACAACCGCAGTCCGG GTAATTCCAGCAAGCGGCACCAAAGTTGGGGACATGGTCGAATTTGGTGGCTTACTTGGCACAGCACCAGTAATGCCAGT AAATGATAAATCTTCCGCTGACTTCATTGCCCGCGGTGGTCGAATCCCAGCACCAATTCATTCTTTTAAAAACTAA
Upstream 100 bases:
>100_bases ATTAGCCGGAAAAGGTGAAGACCTCCAAGTAAAAATACATATTCAGCGGGAAGAAATTTTCAACGCAATGCACAAACTTT AGGATGGGGGCGATGCTAGT
Downstream 100 bases:
>100_bases CAAAAAAGGTTTCCTCCAAATTTGCGAGGAAACCTTTTATTATGTCGTTTTTCGTTCTACTAAATGGAAATCTAAATCGA GAAGTGGCAAGTTACTACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKIYQKIVTKARNLVAVGEAIESEFGIPIINKRISVTPI AIIAGSSADTDYVEFAKTLDAAAKEVGVNFIGGYSALVQKGYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDA VRQMGEVIKETADLTADTQGLGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVSGPGVVKRAIEKVKGEPFDIVAE TVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLAPTPAIGDSVAHILEEMGLEMVGTHGTTAALALLNDAVKKGGVMA CGHVGGLSGAFIPVSEDAGMIEAVQQGALNLEKLEAMTAICSVGLDMIAVPGDTTAETLAAMIADEAAIGVINNKTTAVR VIPASGTKVGDMVEFGGLLGTAPVMPVNDKSSADFIARGGRIPAPIHSFKN
Sequences:
>Translated_451_residues METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKIYQKIVTKARNLVAVGEAIESEFGIPIINKRISVTPI AIIAGSSADTDYVEFAKTLDAAAKEVGVNFIGGYSALVQKGYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDA VRQMGEVIKETADLTADTQGLGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVSGPGVVKRAIEKVKGEPFDIVAE TVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLAPTPAIGDSVAHILEEMGLEMVGTHGTTAALALLNDAVKKGGVMA CGHVGGLSGAFIPVSEDAGMIEAVQQGALNLEKLEAMTAICSVGLDMIAVPGDTTAETLAAMIADEAAIGVINNKTTAVR VIPASGTKVGDMVEFGGLLGTAPVMPVNDKSSADFIARGGRIPAPIHSFKN >Mature_451_residues METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKIYQKIVTKARNLVAVGEAIESEFGIPIINKRISVTPI AIIAGSSADTDYVEFAKTLDAAAKEVGVNFIGGYSALVQKGYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDA VRQMGEVIKETADLTADTQGLGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVSGPGVVKRAIEKVKGEPFDIVAE TVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLAPTPAIGDSVAHILEEMGLEMVGTHGTTAALALLNDAVKKGGVMA CGHVGGLSGAFIPVSEDAGMIEAVQQGALNLEKLEAMTAICSVGLDMIAVPGDTTAETLAAMIADEAAIGVINNKTTAVR VIPASGTKVGDMVEFGGLLGTAPVMPVNDKSSADFIARGGRIPAPIHSFKN
Specific function: Unknown
COG id: COG2848
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0210 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007841 [H]
Pfam domain/function: PF05167 DUF711 [H]
EC number: NA
Molecular weight: Translated: 46942; Mature: 46942
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKIYQKIVTKARNLVAVGE CCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AIESEFGIPIINKRISVTPIAIIAGSSADTDYVEFAKTLDAAAKEVGVNFIGGYSALVQK HHHHCCCCCEECCCEEECEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHC GYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDAVRQMGEVIKETADLTADTQG CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC LGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVSGPGVVKRAIEKVKGEPFDIVAE CCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHH TVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLAPTPAIGDSVAHILEEMGLEMVGTH HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEECCC GTTAALALLNDAVKKGGVMACGHVGGLSGAFIPVSEDAGMIEAVQQGALNLEKLEAMTAI CHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHH CSVGLDMIAVPGDTTAETLAAMIADEAAIGVINNKTTAVRVIPASGTKVGDMVEFGGLLG HHCCCCEEECCCCCHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCHHHHHHHCCHHC TAPVMPVNDKSSADFIARGGRIPAPIHSFKN CCCCCCCCCCCCCHHHHCCCCCCCCHHCCCC >Mature Secondary Structure METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKIYQKIVTKARNLVAVGE CCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AIESEFGIPIINKRISVTPIAIIAGSSADTDYVEFAKTLDAAAKEVGVNFIGGYSALVQK HHHHCCCCCEECCCEEECEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHC GYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDAVRQMGEVIKETADLTADTQG CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC LGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVSGPGVVKRAIEKVKGEPFDIVAE CCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHH TVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLAPTPAIGDSVAHILEEMGLEMVGTH HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEECCC GTTAALALLNDAVKKGGVMACGHVGGLSGAFIPVSEDAGMIEAVQQGALNLEKLEAMTAI CHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHH CSVGLDMIAVPGDTTAETLAAMIADEAAIGVINNKTTAVRVIPASGTKVGDMVEFGGLLG HHCCCCEEECCCCCHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCHHHHHHHCCHHC TAPVMPVNDKSSADFIARGGRIPAPIHSFKN CCCCCCCCCCCCCHHHHCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA