| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is hsdM [C]
Identifier: 116871898
GI number: 116871898
Start: 513239
End: 514828
Strand: Direct
Name: hsdM [C]
Synonym: lwe0478
Alternate gene names: 116871898
Gene position: 513239-514828 (Clockwise)
Preceding gene: 116871897
Following gene: 116871899
Centisome position: 18.24
GC content: 34.21
Gene sequence:
>1590_bases ATGGCATTATCAACTGAACAAAAAGCAAAAATGTGGGCAATGCTCAATCAAACACGCGGCCAAATTGGTTTAACTGCATA TAAAGACTATATCTTCGGAATTTTGTTTTATAAATATTTATCTGAAAAAGCAACACATTGGCTAAATGGCGTATTACGTG GGGAAAAATGGGAGAGTGTTTATTCTCAAGATTCCGTAAAGGCCTTAAATTATATGAAAAAGAATCTTGGATATGCGATT CAACCAAATGAATTCTTTGTAGACTGGAAAAAAGCAATTGATACAGACCGTTTCAATATTGGAATGATGACAGATACATT TACGCATTTTAATCAACAAGTTGCATTTGAAGCGAAAAATGATTTTGAAGGAATTTTTGATGGCATGCGCTTTGATAGTG CGGATTTAGGTGCTAATGCGCAAGCTAGGGCTAGTGTCATGATTTCTATGATTGAATTACTATCCTCTCCTGAATTTGAT TTATCTGGTAGTAATGATACTGTTTCAGATATTTATGAGTATCTAGTTGCACAATTTGCTACTGTCCTAGCATCTGATAT GGGACAATACTATACACCAAAAGAAATATCTAATGTAATGGCTCGAATTTTAACTTTTGGCCGAGAAGATATGGAAAAAT TTTCTATTTTTGATCCTACTGTTGGTTCTGGTTCACTATTACTTACAACCGCAAGTTATATGAAGAACTCAGGTAGACGC GGGGTAATTAAGTATTATGGTCAAGAAAAAGATGCAACACCTTACCGCTTATCAAGAATGAATTTGATGATGCATGGTAT TGAATATAATGATATTAATATTAATCATGCGGATACACTTGAAAGTGACTGGCCAGATGGGGTAGTGGATGGAAAAGATA CTCCTCGAATGTTTGATGTGGTAATGGCGAATCCTCCTTATTCAGCACATTGGAATAATAAAGATCGTGAAGATGATCCA AGATGGCGGGAATATGGTGTTTCGCCTAAGACAAAAGCTGATTATGCCTTTTTATTACACTGTTTGTATCACTTAGAAGA TAATGGACGCATGGCGATAATTTTACCACATGGTGTATTATTCCGCGGAGCTTCTGAGGGGCGTATCCGAAAAGCTTTAA TTGATAAGCACCAGATTGAGGCGATAATTGGTTTTCCTGAAAAATTATTCTTAAATGCCGCTATCCCAGTTTGTGTTGTT ATTTTAAGAAAAAATCGTATTGAGTCGGATGTTCTATTTATTGATGCGAGTAAAGAATTTGAGAAAACGAAAAAGCAAAA CAGTTTACGTTCTGAAGATGTAGACAAAATTGTTGATACAGTAATTAATCGTAAAGAGATAAATAAATATTCTCATGTAG CAACTTTGGATGAAATAAAAGAAAATGATTATAATTTAAATATTCCTCGATATGTGGATACTTTTGAAGAAGAAGAAACT ATTGATTTGGTTGCACTTGGTAATGAAATGGTTGCATTAAATGCTGATATAAAAAAAGCTGAAACTGATTTTCTTGGTTT ATTAGATGAGTTAGCTGTTACTACGGATACAAAGGATATAATTGAAGCTACTAAGGCGGTATTTCGATGA
Upstream 100 bases:
>100_bases TTGAAGCCTCTGATTTTGAAGAAGAGCTAATGGCATTCTTCAATTCACTATAAGCAAATATGAGTTTTATTTATAATAAG AGAAAGAAGGAAAAAACATA
Downstream 100 bases:
>100_bases AAAATTTAGAAAAAAGAGTGCCAATAATCCGGTTTAAAGGCTTTTCTGAAGCTTGGGAACAGCGTAAGGTTTTAGATTAT GCAATACACACTTATGGTGG
Product: type I restriction enzyme M protein
Products: NA
Alternate protein names: M.MpnORFDP [H]
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MALSTEQKAKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESVYSQDSVKALNYMKKNLGYAI QPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQVAFEAKNDFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFD LSGSNDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRR GVIKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVDGKDTPRMFDVVMANPPYSAHWNNKDREDDP RWREYGVSPKTKADYAFLLHCLYHLEDNGRMAIILPHGVLFRGASEGRIRKALIDKHQIEAIIGFPEKLFLNAAIPVCVV ILRKNRIESDVLFIDASKEFEKTKKQNSLRSEDVDKIVDTVINRKEINKYSHVATLDEIKENDYNLNIPRYVDTFEEEET IDLVALGNEMVALNADIKKAETDFLGLLDELAVTTDTKDIIEATKAVFR
Sequences:
>Translated_529_residues MALSTEQKAKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESVYSQDSVKALNYMKKNLGYAI QPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQVAFEAKNDFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFD LSGSNDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRR GVIKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVDGKDTPRMFDVVMANPPYSAHWNNKDREDDP RWREYGVSPKTKADYAFLLHCLYHLEDNGRMAIILPHGVLFRGASEGRIRKALIDKHQIEAIIGFPEKLFLNAAIPVCVV ILRKNRIESDVLFIDASKEFEKTKKQNSLRSEDVDKIVDTVINRKEINKYSHVATLDEIKENDYNLNIPRYVDTFEEEET IDLVALGNEMVALNADIKKAETDFLGLLDELAVTTDTKDIIEATKAVFR >Mature_528_residues ALSTEQKAKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESVYSQDSVKALNYMKKNLGYAIQ PNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQVAFEAKNDFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDL SGSNDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRRG VIKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVDGKDTPRMFDVVMANPPYSAHWNNKDREDDPR WREYGVSPKTKADYAFLLHCLYHLEDNGRMAIILPHGVLFRGASEGRIRKALIDKHQIEAIIGFPEKLFLNAAIPVCVVI LRKNRIESDVLFIDASKEFEKTKKQNSLRSEDVDKIVDTVINRKEINKYSHVATLDEIKENDYNLNIPRYVDTFEEEETI DLVALGNEMVALNADIKKAETDFLGLLDELAVTTDTKDIIEATKAVFR
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=413, Percent_Identity=23.0024213075061, Blast_Score=86, Evalue=7e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 60376; Mature: 60245
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSTEQKAKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESV CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH YSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQVAFEAKN HHHHHHHHHHHHHHHCCCEECCCHHEEEHHHHCCCCCEEEEEEHHHHHHCCCEEEEECCC DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSGSNDTVSDIYEYLVAQFA CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH TVLASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRR HHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCCCC GVIKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVDGKDTPRMFDV CEEEECCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE VMANPPYSAHWNNKDREDDPRWREYGVSPKTKADYAFLLHCLYHLEDNGRMAIILPHGVL EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEE FRGASEGRIRKALIDKHQIEAIIGFPEKLFLNAAIPVCVVILRKNRIESDVLFIDASKEF EECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH EKTKKQNSLRSEDVDKIVDTVINRKEINKYSHVATLDEIKENDYNLNIPRYVDTFEEEET HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCC IDLVALGNEMVALNADIKKAETDFLGLLDELAVTTDTKDIIEATKAVFR EEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure ALSTEQKAKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESV CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH YSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQVAFEAKN HHHHHHHHHHHHHHHCCCEECCCHHEEEHHHHCCCCCEEEEEEHHHHHHCCCEEEEECCC DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSGSNDTVSDIYEYLVAQFA CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH TVLASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRR HHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCCCC GVIKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVDGKDTPRMFDV CEEEECCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE VMANPPYSAHWNNKDREDDPRWREYGVSPKTKADYAFLLHCLYHLEDNGRMAIILPHGVL EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEE FRGASEGRIRKALIDKHQIEAIIGFPEKLFLNAAIPVCVVILRKNRIESDVLFIDASKEF EECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH EKTKKQNSLRSEDVDKIVDTVINRKEINKYSHVATLDEIKENDYNLNIPRYVDTFEEEET HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCC IDLVALGNEMVALNADIKKAETDFLGLLDELAVTTDTKDIIEATKAVFR EEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]