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The map label for this gene is licT [H]

Identifier: 116871688

GI number: 116871688

Start: 292112

End: 292957

Strand: Direct

Name: licT [H]

Synonym: lwe0268

Alternate gene names: 116871688

Gene position: 292112-292957 (Clockwise)

Preceding gene: 116871687

Following gene: 116871689

Centisome position: 10.38

GC content: 32.27

Gene sequence:

>846_bases
ATGATAATAAAAAAAGTTTTTAATAATAATGTTGTTTTAGTCATTGAAAATCCTACAGAAGAAAAAATTTTGATGGGAAA
AGGTATTGGTTTTCAAAAGTTTCCAGGCGACCCGGTTGATTTAGCGAATGTAGAAAAAACATTTGTATTGAATGATGAGG
CAACAGAAGGGAAATTGGATGCTTTTTTTGAGGAAGTTCCTTTAGAGGTTATTCAAATGTGTGCTCATTTGTTGAAAAGC
GGCAAAAAAGTACTCGGACCACATATTACAGATAATTTACTCATTCCACTTGCCGACCATATTAATTTTGCAATAACACG
TGTAAAAGAAGGAATTCAAATCGAGTATCCTTTAAAATGGGAAATTCGTCATATGTATCCAGAAGAAGTTGCCTTTGCAG
AATCAGTAATCAAATGGATGAAAGACAAAGAAAATATTGAACTACCTAAAGAAGAAGTGGTTCCAATCGCCATGCATTTT
GTTAATGCTAGGATTGGTACAGCAGAAGTTAACCAAGCTTTTGAAATGACAACTTTGGTTGCAAAAATTTTAGATATTAT
TAATTATCATTATCTTATTCAAGTAGATGAAGATTCATTAAATTATGCACGCTTAATGACACATTTGCGTTATTTCATTT
TAAGGCAAATGAAAAAAGAATCAGACATAGTAGAGGAAGCCATTCTTTATGATGTAGTAAAAAGTAAATATCCAAAAGCC
TTTGAGTGTGCTTTAAAAGTCAAGAAATTACTCGAAGAAACAATGGGTTGGATTGTTAATCATGATGAGGTGCTATACCT
CACACTGCACATCCACAGGGTTACTACTAGAGAAAAAACAAAATAA

Upstream 100 bases:

>100_bases
AGTTTTTACTGGTATCAAAAAGTCATCACTTCAAATGGAGAAACCCTGTCATAACTTAACTTTCCTAGATATAAACTAAA
CTATTGAAGAGGAATAAAAG

Downstream 100 bases:

>100_bases
TTTATTGTAGGATCGTTACTGTTCGGCAGGCGTGACCTAAATAAAAGATAGCGACACTTAATTTTAAGTAGTTATATCTT
TTATTTGGGTCTTTTTTATT

Product: transcription antiterminator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MIIKKVFNNNVVLVIENPTEEKILMGKGIGFQKFPGDPVDLANVEKTFVLNDEATEGKLDAFFEEVPLEVIQMCAHLLKS
GKKVLGPHITDNLLIPLADHINFAITRVKEGIQIEYPLKWEIRHMYPEEVAFAESVIKWMKDKENIELPKEEVVPIAMHF
VNARIGTAEVNQAFEMTTLVAKILDIINYHYLIQVDEDSLNYARLMTHLRYFILRQMKKESDIVEEAILYDVVKSKYPKA
FECALKVKKLLEETMGWIVNHDEVLYLTLHIHRVTTREKTK

Sequences:

>Translated_281_residues
MIIKKVFNNNVVLVIENPTEEKILMGKGIGFQKFPGDPVDLANVEKTFVLNDEATEGKLDAFFEEVPLEVIQMCAHLLKS
GKKVLGPHITDNLLIPLADHINFAITRVKEGIQIEYPLKWEIRHMYPEEVAFAESVIKWMKDKENIELPKEEVVPIAMHF
VNARIGTAEVNQAFEMTTLVAKILDIINYHYLIQVDEDSLNYARLMTHLRYFILRQMKKESDIVEEAILYDVVKSKYPKA
FECALKVKKLLEETMGWIVNHDEVLYLTLHIHRVTTREKTK
>Mature_281_residues
MIIKKVFNNNVVLVIENPTEEKILMGKGIGFQKFPGDPVDLANVEKTFVLNDEATEGKLDAFFEEVPLEVIQMCAHLLKS
GKKVLGPHITDNLLIPLADHINFAITRVKEGIQIEYPLKWEIRHMYPEEVAFAESVIKWMKDKENIELPKEEVVPIAMHF
VNARIGTAEVNQAFEMTTLVAKILDIINYHYLIQVDEDSLNYARLMTHLRYFILRQMKKESDIVEEAILYDVVKSKYPKA
FECALKVKKLLEETMGWIVNHDEVLYLTLHIHRVTTREKTK

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=274, Percent_Identity=32.4817518248175, Blast_Score=180, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32534; Mature: 32534

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKKVFNNNVVLVIENPTEEKILMGKGIGFQKFPGDPVDLANVEKTFVLNDEATEGKLD
CCCCEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
AFFEEVPLEVIQMCAHLLKSGKKVLGPHITDNLLIPLADHINFAITRVKEGIQIEYPLKW
HHHHHCCHHHHHHHHHHHHCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCEEECCCEE
EIRHMYPEEVAFAESVIKWMKDKENIELPKEEVVPIAMHFVNARIGTAEVNQAFEMTTLV
EHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AKILDIINYHYLIQVDEDSLNYARLMTHLRYFILRQMKKESDIVEEAILYDVVKSKYPKA
HHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
FECALKVKKLLEETMGWIVNHDEVLYLTLHIHRVTTREKTK
HHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MIIKKVFNNNVVLVIENPTEEKILMGKGIGFQKFPGDPVDLANVEKTFVLNDEATEGKLD
CCCCEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
AFFEEVPLEVIQMCAHLLKSGKKVLGPHITDNLLIPLADHINFAITRVKEGIQIEYPLKW
HHHHHCCHHHHHHHHHHHHCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCEEECCCEE
EIRHMYPEEVAFAESVIKWMKDKENIELPKEEVVPIAMHFVNARIGTAEVNQAFEMTTLV
EHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AKILDIINYHYLIQVDEDSLNYARLMTHLRYFILRQMKKESDIVEEAILYDVVKSKYPKA
HHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
FECALKVKKLLEETMGWIVNHDEVLYLTLHIHRVTTREKTK
HHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]