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The map label for this gene is ycdA [H]

Identifier: 116871668

GI number: 116871668

Start: 268082

End: 269137

Strand: Direct

Name: ycdA [H]

Synonym: lwe0248

Alternate gene names: 116871668

Gene position: 268082-269137 (Clockwise)

Preceding gene: 116871667

Following gene: 116871669

Centisome position: 9.53

GC content: 29.26

Gene sequence:

>1056_bases
ATGAAAAAATTAGTCACATTATTAACCATATTTTGTTTAGCTTTATTAGTAGGATGTGGAGGAACAGGGACATCTGATTC
GGATAAAAAGAAAGTAAAAGTAGAACCAAAAGCTTCGAATGATTCGGTAAAAGTAGAAGTAAAATCGGGAGAATATTCAG
TAATTCCTGAAGTAACTAAAGACGATTCAAGTACACTCGCGTTAACAATAAATGTGAGCAATACTGGTAAAGAAAAAATA
GTTGTTGATTCTTATGCATTTGAGCTTTATGAAGAAGATAATGGTGAAAAAATAAAAGCAGAAGATGTATACAATAGAGA
TATTAATACTTTTGAAACTGAACGATTAAGTGCAGGTAAAAATGTAACAGGAACAATCTTTTTTAATATTGATCCAAAAA
AAGATTATAAGTTAGTATATTCCCAAGAATCTTATGGTGATTCAGCAGAAGATGAAGATATTGAATTAGACTTAGATTTA
TCTAAATATGCAGATTCAACAAAAGTATTTGATGAAAGCCAAAAAGCTGCAACTGCATTTATAGATGTTCAGTTTTTAGG
AAAAGAAAATGAAGATTATGACAAGCTAGTTGGTAATAATAAAGATGAAACTAAAAAAGAAATACTTGAGGAATATCAAA
AAGAAAATGAAGATATGTTATTCTCAGAATTAGATCTCAAAGATGAAGATTATAAAAAAAGTTTTGATAGTTTTACCTTA
GTACAAGGCAAGCGAGCTAAGTTCGATAAAGATCTATATGCTCAATTTGATGATCAAGCGGTTGTAAGTATTGATATAGA
AGAAGCATTATCTGATTATGCTATAGAAGAACTATTTTATGAATATGAAGAGAAGTATATGGATTCTTCGGAGGACTATG
AGGGTGCAGAAAAATATGCGTACTCTAAATATAAAGAAATTCTGGAAAAATCGAAGTTGAAAGGTGAGTCAGAAGATCTT
TTACTATATCTTGAAAAGAAAGATGGTAAATGGAATGTAGACTTAAGCCTAGATGATAATAAATATGTAATCTCAGCTTT
TATTGGAGATATTTAA

Upstream 100 bases:

>100_bases
TGAGGGGGATTAATAGAAAGTTTTAGCTAAGAGAAAAGATGGATTCAAAATGGAGAAGTTAATCATTTATAAGGGAGTTT
ACAACAGGGAGGAAGACAGA

Downstream 100 bases:

>100_bases
TAGTAATAAGTAGCCAGTTCTCAAGCAATAGTTCAAAATCTATTATTTGAGAACTGGTTTTCAGATAGGAGATTAAGTTG
TGAAACATAAAAAATGGTTA

Product: putative secreted protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKKLVTLLTIFCLALLVGCGGTGTSDSDKKKVKVEPKASNDSVKVEVKSGEYSVIPEVTKDDSSTLALTINVSNTGKEKI
VVDSYAFELYEEDNGEKIKAEDVYNRDINTFETERLSAGKNVTGTIFFNIDPKKDYKLVYSQESYGDSAEDEDIELDLDL
SKYADSTKVFDESQKAATAFIDVQFLGKENEDYDKLVGNNKDETKKEILEEYQKENEDMLFSELDLKDEDYKKSFDSFTL
VQGKRAKFDKDLYAQFDDQAVVSIDIEEALSDYAIEELFYEYEEKYMDSSEDYEGAEKYAYSKYKEILEKSKLKGESEDL
LLYLEKKDGKWNVDLSLDDNKYVISAFIGDI

Sequences:

>Translated_351_residues
MKKLVTLLTIFCLALLVGCGGTGTSDSDKKKVKVEPKASNDSVKVEVKSGEYSVIPEVTKDDSSTLALTINVSNTGKEKI
VVDSYAFELYEEDNGEKIKAEDVYNRDINTFETERLSAGKNVTGTIFFNIDPKKDYKLVYSQESYGDSAEDEDIELDLDL
SKYADSTKVFDESQKAATAFIDVQFLGKENEDYDKLVGNNKDETKKEILEEYQKENEDMLFSELDLKDEDYKKSFDSFTL
VQGKRAKFDKDLYAQFDDQAVVSIDIEEALSDYAIEELFYEYEEKYMDSSEDYEGAEKYAYSKYKEILEKSKLKGESEDL
LLYLEKKDGKWNVDLSLDDNKYVISAFIGDI
>Mature_351_residues
MKKLVTLLTIFCLALLVGCGGTGTSDSDKKKVKVEPKASNDSVKVEVKSGEYSVIPEVTKDDSSTLALTINVSNTGKEKI
VVDSYAFELYEEDNGEKIKAEDVYNRDINTFETERLSAGKNVTGTIFFNIDPKKDYKLVYSQESYGDSAEDEDIELDLDL
SKYADSTKVFDESQKAATAFIDVQFLGKENEDYDKLVGNNKDETKKEILEEYQKENEDMLFSELDLKDEDYKKSFDSFTL
VQGKRAKFDKDLYAQFDDQAVVSIDIEEALSDYAIEELFYEYEEKYMDSSEDYEGAEKYAYSKYKEILEKSKLKGESEDL
LLYLEKKDGKWNVDLSLDDNKYVISAFIGDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015250
- InterPro:   IPR021652 [H]

Pfam domain/function: PF11611 TRF2 [H]

EC number: NA

Molecular weight: Translated: 40039; Mature: 40039

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLVTLLTIFCLALLVGCGGTGTSDSDKKKVKVEPKASNDSVKVEVKSGEYSVIPEVTK
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCEEECCCCCC
DDSSTLALTINVSNTGKEKIVVDSYAFELYEEDNGEKIKAEDVYNRDINTFETERLSAGK
CCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEECHHCCCCCCCHHHHHHHCCC
NVTGTIFFNIDPKKDYKLVYSQESYGDSAEDEDIELDLDLSKYADSTKVFDESQKAATAF
CCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEHHHHCCCHHHHCCCCHHEEEE
IDVQFLGKENEDYDKLVGNNKDETKKEILEEYQKENEDMLFSELDLKDEDYKKSFDSFTL
EEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCEEE
VQGKRAKFDKDLYAQFDDQAVVSIDIEEALSDYAIEELFYEYEEKYMDSSEDYEGAEKYA
ECCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
YSKYKEILEKSKLKGESEDLLLYLEKKDGKWNVDLSLDDNKYVISAFIGDI
HHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEECCC
>Mature Secondary Structure
MKKLVTLLTIFCLALLVGCGGTGTSDSDKKKVKVEPKASNDSVKVEVKSGEYSVIPEVTK
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCEEECCCCCC
DDSSTLALTINVSNTGKEKIVVDSYAFELYEEDNGEKIKAEDVYNRDINTFETERLSAGK
CCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEECHHCCCCCCCHHHHHHHCCC
NVTGTIFFNIDPKKDYKLVYSQESYGDSAEDEDIELDLDLSKYADSTKVFDESQKAATAF
CCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEHHHHCCCHHHHCCCCHHEEEE
IDVQFLGKENEDYDKLVGNNKDETKKEILEEYQKENEDMLFSELDLKDEDYKKSFDSFTL
EEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCEEE
VQGKRAKFDKDLYAQFDDQAVVSIDIEEALSDYAIEELFYEYEEKYMDSSEDYEGAEKYA
ECCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
YSKYKEILEKSKLKGESEDLLLYLEKKDGKWNVDLSLDDNKYVISAFIGDI
HHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]