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The map label for this gene is rtcB [H]

Identifier: 116871640

GI number: 116871640

Start: 227297

End: 228475

Strand: Direct

Name: rtcB [H]

Synonym: lwe0220

Alternate gene names: 116871640

Gene position: 227297-228475 (Clockwise)

Preceding gene: 116871639

Following gene: 116871641

Centisome position: 8.08

GC content: 37.07

Gene sequence:

>1179_bases
ATGCTAACATTAAAAGGAAAATATAACGAAGCAACAGTTTATACAGACAATATTGATGACAATACGATTGGACAAATTAT
TACTCTTTGTAGTCAGCCGTTTGTGAAGGACAGCAAGATTCGAATCATGCCTGATACTCATGGTGGTAAAGGCTGCGTGA
TTGGAACAACGATGACGATTCAAGATAAAATTGTTCCTAATTTAGTTGGAGTAGATATTGGCTGCGGTCTATATGTAGTA
AAACTAAAACCTGGTAAATTAAAAATGAGTTTTGATAAATTGGATAAAGTTATTCGTGAACGTGTTCCATCAGGAAGTAG
GACGCATGACAAAGCTATTGATGATTTTGATTTGGATGGCGTCATTGCTCCAATTCATCGCGGCTGGGCATCTAGGAGTA
TAGGGACGCTCGGTGGCGGGAACCATTTTATTGAGGTGAATCAAGGGTCAGATGGAATTTATCTTGTAATTCATAGTGGA
AGCCGGGTGCTTGGGAAGGAAATCGCGGAATATCATCAAGAAGTCGCTTATAAAAAATTAGATGGTTTGCGTAAAGAATT
AAAAGTGGCTGCAACTAAAGCGAAAAAAACAGGAAGCTTAAAAATGGTTAATGATTTTATGAGTGATCGTGAATTAGTAA
AGCTAGATTATGATTTATCTTATGTAACTGGTTCGGATTTAGAACATTATTTGAATGATATGGAAATTGCACAAAGATTT
GCAGCTCGCAATCGTTATGTGATGGCGCAAATAATTTTAAAAGCGATGAAGTGGGACAAAGCGGTTATTTCATCGTTTGA
TTGTGTTCATAATTATATCGATATTAATAATCATATGCTTAGAAAAGGTGCTACTTCAGCTCAGTTAGGTGAACAAATTA
TTGTGCCGCTGAATATGCGTGATGGGAGTATTCTAGCAACTGGGAAAGGTAATCCAGATTGGAATTACTCGGCGCCGCAT
GGGGCAGGAAGAATGTTAAGTCGTTCTAATGCTAAAGCGCAGATCAGTCTAGAAAGTTATCAGAAGGCAATGAAAGATGT
CTGGACTACTTCCGTTTCTAAAAAAACAATTGATGAAGCGCCAAAAGCATACAAATCTGCCCGACAATTACTTGCTGATG
TTGAAGACACAATGGAAATTCAAGAAATAATCAAACCTTTATACAACTTTAAAGCATAA

Upstream 100 bases:

>100_bases
AAGTGAGTCAAATGACAGAGGGAAAACTGAGTAATTTAAACAGCTAGGAAGAGAAGTGAGGATTTTCATTTCTCTATTAA
ACAGAAAATGAGGAATAGAA

Downstream 100 bases:

>100_bases
CCGAGAAGAAGTGGCAGATATTGTGCAATGCCGCTTCTTCTTTGCATGAGAACGCAATTGGGTAAGGAAATAAGTTCTAA
CTTTTTCTGTAATCTGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLTLKGKYNEATVYTDNIDDNTIGQIITLCSQPFVKDSKIRIMPDTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVV
KLKPGKLKMSFDKLDKVIRERVPSGSRTHDKAIDDFDLDGVIAPIHRGWASRSIGTLGGGNHFIEVNQGSDGIYLVIHSG
SRVLGKEIAEYHQEVAYKKLDGLRKELKVAATKAKKTGSLKMVNDFMSDRELVKLDYDLSYVTGSDLEHYLNDMEIAQRF
AARNRYVMAQIILKAMKWDKAVISSFDCVHNYIDINNHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNPDWNYSAPH
GAGRMLSRSNAKAQISLESYQKAMKDVWTTSVSKKTIDEAPKAYKSARQLLADVEDTMEIQEIIKPLYNFKA

Sequences:

>Translated_392_residues
MLTLKGKYNEATVYTDNIDDNTIGQIITLCSQPFVKDSKIRIMPDTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVV
KLKPGKLKMSFDKLDKVIRERVPSGSRTHDKAIDDFDLDGVIAPIHRGWASRSIGTLGGGNHFIEVNQGSDGIYLVIHSG
SRVLGKEIAEYHQEVAYKKLDGLRKELKVAATKAKKTGSLKMVNDFMSDRELVKLDYDLSYVTGSDLEHYLNDMEIAQRF
AARNRYVMAQIILKAMKWDKAVISSFDCVHNYIDINNHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNPDWNYSAPH
GAGRMLSRSNAKAQISLESYQKAMKDVWTTSVSKKTIDEAPKAYKSARQLLADVEDTMEIQEIIKPLYNFKA
>Mature_392_residues
MLTLKGKYNEATVYTDNIDDNTIGQIITLCSQPFVKDSKIRIMPDTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVV
KLKPGKLKMSFDKLDKVIRERVPSGSRTHDKAIDDFDLDGVIAPIHRGWASRSIGTLGGGNHFIEVNQGSDGIYLVIHSG
SRVLGKEIAEYHQEVAYKKLDGLRKELKVAATKAKKTGSLKMVNDFMSDRELVKLDYDLSYVTGSDLEHYLNDMEIAQRF
AARNRYVMAQIILKAMKWDKAVISSFDCVHNYIDINNHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNPDWNYSAPH
GAGRMLSRSNAKAQISLESYQKAMKDVWTTSVSKKTIDEAPKAYKSARQLLADVEDTMEIQEIIKPLYNFKA

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=397, Percent_Identity=30.2267002518892, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43579; Mature: 43579

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLKGKYNEATVYTDNIDDNTIGQIITLCSQPFVKDSKIRIMPDTHGGKGCVIGTTMTI
CEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEEE
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMSFDKLDKVIRERVPSGSRTHDKAIDDFDLDG
HHHHCCHHHCEEECCCEEEEEECCCCEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VIAPIHRGWASRSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKKL
EEHHHHCCHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
DGLRKELKVAATKAKKTGSLKMVNDFMSDRELVKLDYDLSYVTGSDLEHYLNDMEIAQRF
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCEEECCCCHHHHHHHHHHHHHHH
AARNRYVMAQIILKAMKWDKAVISSFDCVHNYIDINNHMLRKGATSAQLGEQIIVPLNMR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCEEEEEEECC
DGSILATGKGNPDWNYSAPHGAGRMLSRSNAKAQISLESYQKAMKDVWTTSVSKKTIDEA
CCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
PKAYKSARQLLADVEDTMEIQEIIKPLYNFKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTLKGKYNEATVYTDNIDDNTIGQIITLCSQPFVKDSKIRIMPDTHGGKGCVIGTTMTI
CEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEEE
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMSFDKLDKVIRERVPSGSRTHDKAIDDFDLDG
HHHHCCHHHCEEECCCEEEEEECCCCEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VIAPIHRGWASRSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKKL
EEHHHHCCHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
DGLRKELKVAATKAKKTGSLKMVNDFMSDRELVKLDYDLSYVTGSDLEHYLNDMEIAQRF
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCEEECCCCHHHHHHHHHHHHHHH
AARNRYVMAQIILKAMKWDKAVISSFDCVHNYIDINNHMLRKGATSAQLGEQIIVPLNMR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCEEEEEEECC
DGSILATGKGNPDWNYSAPHGAGRMLSRSNAKAQISLESYQKAMKDVWTTSVSKKTIDEA
CCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
PKAYKSARQLLADVEDTMEIQEIIKPLYNFKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]