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The map label for this gene is ctc [H]

Identifier: 116871593

GI number: 116871593

Start: 172139

End: 172762

Strand: Direct

Name: ctc [H]

Synonym: lwe0173

Alternate gene names: 116871593

Gene position: 172139-172762 (Clockwise)

Preceding gene: 116871589

Following gene: 116871594

Centisome position: 6.12

GC content: 37.82

Gene sequence:

>624_bases
ATGGCAACAACATTAGAGGTCCAGAAAAGAGAAACAACGCAACATTCAGAAGTAACGAAATTGCGTAGTGAAGGAAAAGT
ACCTGGAATTATTTATGGTTATAAATCGGAAAATGTTCCGGTTTCCGTTGATTCTTTGGAATTAATCAAAGCAGTTCGTG
ATAATGGTCGAAACGCCGTATTCTCAGTTACTGTGGACGGTAAAAAATTAAACGTTTTATTACATGAATATCAAGTGGAT
CCGTTAAAAGATGTATTAGTACATGTGGATTTATTAGCAGTTGATATGAATGAAGAAGTTGAGACCGATGTTCGCGTGGT
ATTAGTTGGAGATGCACCAGGAGTTAAAGCTGGCGGTGTATTACAACAAATTATCCATGATGTAAAAGTTTCAGCAACAC
CAGAAAAATTACCAGAAACAATCGAATTAGACATTTCTTCATTAGAAATCGGTGACGTTTTAACAACAAACGATCTTCCT
AATAACAAAGACTATGTCGTGCAAGCTGAAGAAGAAGAGACAGTAGTTACTGTTTCTGCTCCACGTGCTGAAGAAGAACC
AACGACTACGGAAGCGCCAGAACCAGAAGCGGTTCATGGTAAAGATGAAGAACCAGTAGAATAA

Upstream 100 bases:

>100_bases
CCTTATAAAGCAAAATAAGGCGTTTGCTTTGTTTTGCTATTTTTCTAAAGGGTAGATATAATAGAAGTGTACCAAAATTG
AATGAGTGGAGTGATTTTTT

Downstream 100 bases:

>100_bases
TTTTTATAAATCAAATTGGGAGATACGCATTTATTTGCGATATCTCCCAATTTTTTTGTTATAATGTTTTAAGAGGGAGG
CGGTTTCATGTTAGATAAAT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MATTLEVQKRETTQHSEVTKLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVD
PLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLP
NNKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE

Sequences:

>Translated_207_residues
MATTLEVQKRETTQHSEVTKLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVD
PLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLP
NNKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>Mature_206_residues
ATTLEVQKRETTQHSEVTKLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDP
LKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPN
NKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 22612; Mature: 22480

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTLEVQKRETTQHSEVTKLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAV
CCCCEECHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEE
FSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGV
EEEEECCCEEEEEEEECCCCHHHHHHHEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHH
LQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPNNKDYVVQAEEEETVVTVSA
HHHHHHHHCCCCCHHHCCCEEEEEECEEEECCEEECCCCCCCCCEEEEECCCCEEEEEEC
PRAEEEPTTTEAPEPEAVHGKDEEPVE
CCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATTLEVQKRETTQHSEVTKLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAV
CCCEECHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEE
FSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGV
EEEEECCCEEEEEEEECCCCHHHHHHHEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHH
LQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPNNKDYVVQAEEEETVVTVSA
HHHHHHHHCCCCCHHHCCCEEEEEECEEEECCEEECCCCCCCCCEEEEECCCCEEEEEEC
PRAEEEPTTTEAPEPEAVHGKDEEPVE
CCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]