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The map label for this gene is ygcF [H]

Identifier: 116691136

GI number: 116691136

Start: 3432821

End: 3433453

Strand: Reverse

Name: ygcF [H]

Synonym: Bcen2424_3118

Alternate gene names: 116691136

Gene position: 3433453-3432821 (Counterclockwise)

Preceding gene: 116691137

Following gene: 116691135

Centisome position: 98.55

GC content: 65.24

Gene sequence:

>633_bases
ATGACTTACGCGGTCAAGGAAATTTTCTACACGTTGCAGGGCGAGGGCGCGAATGCGGGCCGGCCGGCCGTGTTCTGCCG
GTTCGCCGGCTGCAACCTGTGGTCGGGCCGCGAAGAGGATCGTGCGGAGGCCGTGTGCCGCTTCTGCGATACGGATTTCG
TCGGCACCGACGGCGAGAACGGCGGCAAGTTCAAGGACGCCGCCGCGCTCGTCGCGACGATCGCCGGCCTGTGGCCGGAG
GGCGAAGCGAATCGCTTCGTCGTCTGCACGGGCGGCGAGCCGATGCTGCAGCTCGACCAGCCGCTCGTCGACGCGCTGCA
CGCGGCCGGCTTCGAGATCGCGATCGAGACCAACGGTTCGCTGCCGGTGCTCGAATCGATCGACTGGATCTGCGTGAGCC
CGAAGGCCGATGCGCCGCTCGTCGTCACGAAGGGCAACGAACTGAAGGTCGTCGTGCCGCAGGACAACCAGCGGCTGGCC
GACTACGCGAAGCTCGACTTCGAGTATTTTCTCGTGCAGCCGATGGACGGCCCGTCGCGCGACCTCAACACGAAGCTCGC
GATCGACTGGTGCAAGCGTCATCCGCAGTGGCGGCTGTCGATGCAGACCCACAAATATCTGAACATTCCCTGA

Upstream 100 bases:

>100_bases
CGGGTGACCGAAGCGCCGCTGTGATGCGGCTCGCGCGGGCAGCGCTTGATGGACAACGGATTCTGATCGACAACGAGCGG
CGCGAGCCGGACGAAGCACG

Downstream 100 bases:

>100_bases
GCCACGGCTTTTGACATCGTGCTGATTACCCGAAAACTCGAATTCGACGCGGGCCACCGCATTCCCGATCACCGCAGCCA
GTGCAGGAACCTGCACGGCC

Product: organic radical activating enzymes-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGGKFKDAAALVATIAGLWPE
GEANRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLA
DYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIP

Sequences:

>Translated_210_residues
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGGKFKDAAALVATIAGLWPE
GEANRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLA
DYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIP
>Mature_209_residues
TYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGGKFKDAAALVATIAGLWPEG
EANRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLAD
YAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=239, Percent_Identity=33.8912133891213, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23199; Mature: 23067

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN
CCEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GGKFKDAAALVATIAGLWPEGEANRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHCCEEEEEEECCCCCCC
DLNTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC
>Mature Secondary Structure 
TYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN
CEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GGKFKDAAALVATIAGLWPEGEANRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHCCEEEEEEECCCCCCC
DLNTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]