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The map label for this gene is yqhC [H]

Identifier: 116691121

GI number: 116691121

Start: 3416281

End: 3417225

Strand: Reverse

Name: yqhC [H]

Synonym: Bcen2424_3103

Alternate gene names: 116691121

Gene position: 3417225-3416281 (Counterclockwise)

Preceding gene: 116691123

Following gene: 116691113

Centisome position: 98.09

GC content: 69.74

Gene sequence:

>945_bases
ATGAGCTTCCAGCCCCTTTTTGCCGACTCGGGCGACCGCGTGCAGCGCCGCATGATCGAGCTGCACACGCGCCTCGCGCC
GAACGAGGGCGACACGCTCGCGGCGCTCGACGGCGTGCGCTTGCTCCGCGTGAGCCGTCCCGCGCCGCGCATGCCCGTGC
TGTACGAGCCGAGCATCATCGTCGTGTGCCAGGGTCGCAAGCTCGGCTATCTCGGCGACCGCTCGTTCGTGTACGACGCG
CAGCAATACCTGGTGCTGTCGGTGCCGCTGCCGTTCGAATGCGAAACCTTCGCGAGCATGGACGAGCCGTTTCTCGCGAT
CTCGATCCGCGTCGATCTCGCCGTGATCGCCGAGCTCGCGATCCTGCTCGACGAGACGCTCGGCGCGGCGATCAGCGAGC
CGCTCGGCGTCTATTCGACGCCGCTCGACGCGCCGCTGGCCGATGCGGTCGTGCGGTTGCTCGAAGCACTCGCGTCGCCG
CACGACACGCGCGTGCTGGGGCCGGCGATCATGCGCGAGATCGCGTATCGCGTGCTGACCGGCGAGCAGGGCGACGCGAT
GCGCGCGGCGCTCGTGCAGCAGCATCATTTCGGCCGCATCGCGAAGGCGCTGCGGCGCATCCATGCGGAGCTGAGGGCCG
ATCTCGACGTCGAGACGCTTGCCCGCGAAGCCGGGATGAGCCTCGCGGTGTTTCACGCGCAGTTCAAGCACGTGACGGCG
ACGTCGCCGATGCAGTACGTGAAGACCGCGCGGCTGCACCAGGCGCGGCTGATGATGGTGCGCGACGGACTGGGCGCCGG
CGCGGCAGCCGCGCGGGTCGGCTATGCGAGCGCGTCGCAGTTCAGTCGCGAGTTCAAGCGGCTGTTCGGCCGCAGCCCCG
CGGATGATGTGCGCTGGATGCGTGACAGCGGGGTGCGCCCGGCGATGGCCGACGCGGACGCATAG

Upstream 100 bases:

>100_bases
GATTTGCCTATTCCTCTTGAATTGCGCGCGAACGCCCGTCAAAACGCGTTCAAGGTGCTAAATTGCGAGCCAGATTCTCT
TGCCGGACAGGACCACGCAG

Downstream 100 bases:

>100_bases
CGTCCCGGGTCTCGCGCGGCGGCTCAGCGCCGCACGATCTTGCGCCGCTGCGCGCTGATGCCCGCATAGTCGGGCAGCGA
TTCGACGCGTTTGCCCGTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSFQPLFADSGDRVQRRMIELHTRLAPNEGDTLAALDGVRLLRVSRPAPRMPVLYEPSIIVVCQGRKLGYLGDRSFVYDA
QQYLVLSVPLPFECETFASMDEPFLAISIRVDLAVIAELAILLDETLGAAISEPLGVYSTPLDAPLADAVVRLLEALASP
HDTRVLGPAIMREIAYRVLTGEQGDAMRAALVQQHHFGRIAKALRRIHAELRADLDVETLAREAGMSLAVFHAQFKHVTA
TSPMQYVKTARLHQARLMMVRDGLGAGAAAARVGYASASQFSREFKRLFGRSPADDVRWMRDSGVRPAMADADA

Sequences:

>Translated_314_residues
MSFQPLFADSGDRVQRRMIELHTRLAPNEGDTLAALDGVRLLRVSRPAPRMPVLYEPSIIVVCQGRKLGYLGDRSFVYDA
QQYLVLSVPLPFECETFASMDEPFLAISIRVDLAVIAELAILLDETLGAAISEPLGVYSTPLDAPLADAVVRLLEALASP
HDTRVLGPAIMREIAYRVLTGEQGDAMRAALVQQHHFGRIAKALRRIHAELRADLDVETLAREAGMSLAVFHAQFKHVTA
TSPMQYVKTARLHQARLMMVRDGLGAGAAAARVGYASASQFSREFKRLFGRSPADDVRWMRDSGVRPAMADADA
>Mature_313_residues
SFQPLFADSGDRVQRRMIELHTRLAPNEGDTLAALDGVRLLRVSRPAPRMPVLYEPSIIVVCQGRKLGYLGDRSFVYDAQ
QYLVLSVPLPFECETFASMDEPFLAISIRVDLAVIAELAILLDETLGAAISEPLGVYSTPLDAPLADAVVRLLEALASPH
DTRVLGPAIMREIAYRVLTGEQGDAMRAALVQQHHFGRIAKALRRIHAELRADLDVETLAREAGMSLAVFHAQFKHVTAT
SPMQYVKTARLHQARLMMVRDGLGAGAAAARVGYASASQFSREFKRLFGRSPADDVRWMRDSGVRPAMADADA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=281, Percent_Identity=46.2633451957295, Blast_Score=253, Evalue=1e-68,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34478; Mature: 34347

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFQPLFADSGDRVQRRMIELHTRLAPNEGDTLAALDGVRLLRVSRPAPRMPVLYEPSII
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHCCCCEEEECCCCCCCCEEECCCEE
VVCQGRKLGYLGDRSFVYDAQQYLVLSVPLPFECETFASMDEPFLAISIRVDLAVIAELA
EEECCCCCCCCCCCCCEEECCEEEEEECCCCCCCHHHHCCCCCEEEEEEEHHHHHHHHHH
ILLDETLGAAISEPLGVYSTPLDAPLADAVVRLLEALASPHDTRVLGPAIMREIAYRVLT
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GEQGDAMRAALVQQHHFGRIAKALRRIHAELRADLDVETLAREAGMSLAVFHAQFKHVTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEHHHHHHHHCC
TSPMQYVKTARLHQARLMMVRDGLGAGAAAARVGYASASQFSREFKRLFGRSPADDVRWM
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RDSGVRPAMADADA
HHCCCCCCCCCCCC
>Mature Secondary Structure 
SFQPLFADSGDRVQRRMIELHTRLAPNEGDTLAALDGVRLLRVSRPAPRMPVLYEPSII
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHCCCCEEEECCCCCCCCEEECCCEE
VVCQGRKLGYLGDRSFVYDAQQYLVLSVPLPFECETFASMDEPFLAISIRVDLAVIAELA
EEECCCCCCCCCCCCCEEECCEEEEEECCCCCCCHHHHCCCCCEEEEEEEHHHHHHHHHH
ILLDETLGAAISEPLGVYSTPLDAPLADAVVRLLEALASPHDTRVLGPAIMREIAYRVLT
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GEQGDAMRAALVQQHHFGRIAKALRRIHAELRADLDVETLAREAGMSLAVFHAQFKHVTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEHHHHHHHHCC
TSPMQYVKTARLHQARLMMVRDGLGAGAAAARVGYASASQFSREFKRLFGRSPADDVRWM
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RDSGVRPAMADADA
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]