Click here to switch to the map view.

The map label for this gene is ybaQ [C]

Identifier: 116691101

GI number: 116691101

Start: 3397519

End: 3397821

Strand: Reverse

Name: ybaQ [C]

Synonym: Bcen2424_3083

Alternate gene names: 116691101

Gene position: 3397821-3397519 (Counterclockwise)

Preceding gene: 116691102

Following gene: 116691099

Centisome position: 97.53

GC content: 68.65

Gene sequence:

>303_bases
ATGACCCGCATCTTCAATCCACCCCATCCGGGCGAAACGCTGCGCGACGACGTGCTGCCGGCGCTCGGTCTGACCGTCAC
CGAGGCCGCGTCGCAACTTGGCGTGACCCGTGCCGCACTGTCGCGGGTCCTGCACGGCCATGCCGGCATCTCGCCGGAAA
TGGCGTTGCGGCTCGAAGCGTGGCTCGGCGAGGAAAACGGGGGAAGGGCCGATCTGTGGCTCGCACAGCAGTCGGCTTAC
GATCTGTGGCAGGCGCGCGCAAAGGGCGCCCCGAAGGTGGCGAGAGCACGGGCGCGCACATGA

Upstream 100 bases:

>100_bases
GCCGTCGGCGTCAACGGCAACTGGCGGCTGACATTCCGATTCGAGGGCCGCGACGTCGTTCTGGTCGATTACCAGGACTA
CCACTAAGGTGATTCAAGCC

Downstream 100 bases:

>100_bases
CGGCGCGCCCGCGAACGTCTCGCCGCCAGCTCAGTACAGGCTCGGCTCGCCGGGCGGGCGCGTCTTGAAACGCTTGTGCA
CCCAGTAATACTGCTCGGGC

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTRIFNPPHPGETLRDDVLPALGLTVTEAASQLGVTRAALSRVLHGHAGISPEMALRLEAWLGEENGGRADLWLAQQSAY
DLWQARAKGAPKVARARART

Sequences:

>Translated_100_residues
MTRIFNPPHPGETLRDDVLPALGLTVTEAASQLGVTRAALSRVLHGHAGISPEMALRLEAWLGEENGGRADLWLAQQSAY
DLWQARAKGAPKVARARART
>Mature_99_residues
TRIFNPPHPGETLRDDVLPALGLTVTEAASQLGVTRAALSRVLHGHAGISPEMALRLEAWLGEENGGRADLWLAQQSAYD
LWQARAKGAPKVARARART

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 10807; Mature: 10676

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIFNPPHPGETLRDDVLPALGLTVTEAASQLGVTRAALSRVLHGHAGISPEMALRLEA
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
WLGEENGGRADLWLAQQSAYDLWQARAKGAPKVARARART
HCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHCCCC
>Mature Secondary Structure 
TRIFNPPHPGETLRDDVLPALGLTVTEAASQLGVTRAALSRVLHGHAGISPEMALRLEA
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
WLGEENGGRADLWLAQQSAYDLWQARAKGAPKVARARART
HCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7937823 [H]