Click here to switch to the map view.

The map label for this gene is rdoA [H]

Identifier: 116691091

GI number: 116691091

Start: 3388299

End: 3389330

Strand: Reverse

Name: rdoA [H]

Synonym: Bcen2424_3073

Alternate gene names: 116691091

Gene position: 3389330-3388299 (Counterclockwise)

Preceding gene: 116691092

Following gene: 116691088

Centisome position: 97.29

GC content: 69.19

Gene sequence:

>1032_bases
ATGCGGGGCATGACAGACGCCACTTCCGCTCCCGCTTCTCCCGCCAGCCCGCCGTTCGCCGGCCTCACGCCCGAGTGCGT
GCTCGACGCGCTCGACAGCGTGCTGATGCCGGCCGGCCTGCGCACCGACGGGCGCCTGCTCGCCCTCAACAGCTACGAAA
ACCGCGTCTACCAGGTCGGTATCGAAGACGGCCCGCCGGTCGTCGCGAAGTTCTATCGTCCGGCGCGCTGGTCGGACGAC
GCGATTCTCGAAGAGCATGCGTTCGTCGCCGAACTCGCCGCGCGCGAGATTCCGGCGGTGCCCGCGCGCGCCTTCGACGG
CCGCACGCTGCACGCGTTCGACGGTTTCCGCTTCTCGATCTTCGAGCGGCGCGGCGGCCGCGCCCCCGATCTCGACCGCA
GCGACACGCTCGAATGGCTCGGCCGTTTCATCGGCCGCATTCATGCGGTCGGCGCGACGCAGCCGTATGTCGCGCGTCCC
GTGCTCGACATCAATACGTTCGGCTACGAGCCGCGCGACTACCTGCTCGCACACGATTTCATTCCGGATGACGTAAGACC
GGCGTACGCGACCGCGGTCGCGCTCGCGCTCGAAGGCGTCGAGGCCGCGTTCGAGCGCGCGGGCGAGATTCGCCTGCTGC
GCACGCACGGCGACTGTCATCCGAGCAACGTGCTGTGGACCGATGCCGGCCCGCATTTCGTCGACTTCGACGACAGCCGG
ATGTCACCGGCCGTGCAGGATCTGTGGCTGCTGCTGCCGGGCGATCGCGAAGGCGCGTCGCGCGCGCTGGCCGACCTGCT
CGCGGGCTACGAGGATTTCTGCGAATTCGAGCCGCGCGAGCTGCATCTGGTCGAAGCGCTGCGCACGCTGCGGCTGATCC
ACTACGCGGCGTGGCTCGCGCGGCGCTGGGACGATCCCGCGTTTCCGGCCGCGTTCCCGTGGTTCAACACGCATCGTTAC
TGGGAAGCGCGCGTGCTCGAACTGCGCGAGCAGATCGGCGCGATGCAGGAAGGGCCGCTCTGGCCCGTGTGA

Upstream 100 bases:

>100_bases
TTTCTCGAGGACCTGATCGACACCGGCGAATCCGTTCTGCCGGCCGGCGCGGCGCTTCACTAAGCACCGACGCTCGTCTT
TCGGTCCGGCAGGCGGCACA

Downstream 100 bases:

>100_bases
CGGTTGCGTGCGCGGCATCCATGCCGCGCGGCAGGTTGGACAGGGCCGCGACGCGTGTGGCCCGCCTGGCTCAGAACTTC
AGCATCAGCTTGATCAGCGC

Product: serine/threonine protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MRGMTDATSAPASPASPPFAGLTPECVLDALDSVLMPAGLRTDGRLLALNSYENRVYQVGIEDGPPVVAKFYRPARWSDD
AILEEHAFVAELAAREIPAVPARAFDGRTLHAFDGFRFSIFERRGGRAPDLDRSDTLEWLGRFIGRIHAVGATQPYVARP
VLDINTFGYEPRDYLLAHDFIPDDVRPAYATAVALALEGVEAAFERAGEIRLLRTHGDCHPSNVLWTDAGPHFVDFDDSR
MSPAVQDLWLLLPGDREGASRALADLLAGYEDFCEFEPRELHLVEALRTLRLIHYAAWLARRWDDPAFPAAFPWFNTHRY
WEARVLELREQIGAMQEGPLWPV

Sequences:

>Translated_343_residues
MRGMTDATSAPASPASPPFAGLTPECVLDALDSVLMPAGLRTDGRLLALNSYENRVYQVGIEDGPPVVAKFYRPARWSDD
AILEEHAFVAELAAREIPAVPARAFDGRTLHAFDGFRFSIFERRGGRAPDLDRSDTLEWLGRFIGRIHAVGATQPYVARP
VLDINTFGYEPRDYLLAHDFIPDDVRPAYATAVALALEGVEAAFERAGEIRLLRTHGDCHPSNVLWTDAGPHFVDFDDSR
MSPAVQDLWLLLPGDREGASRALADLLAGYEDFCEFEPRELHLVEALRTLRLIHYAAWLARRWDDPAFPAAFPWFNTHRY
WEARVLELREQIGAMQEGPLWPV
>Mature_343_residues
MRGMTDATSAPASPASPPFAGLTPECVLDALDSVLMPAGLRTDGRLLALNSYENRVYQVGIEDGPPVVAKFYRPARWSDD
AILEEHAFVAELAAREIPAVPARAFDGRTLHAFDGFRFSIFERRGGRAPDLDRSDTLEWLGRFIGRIHAVGATQPYVARP
VLDINTFGYEPRDYLLAHDFIPDDVRPAYATAVALALEGVEAAFERAGEIRLLRTHGDCHPSNVLWTDAGPHFVDFDDSR
MSPAVQDLWLLLPGDREGASRALADLLAGYEDFCEFEPRELHLVEALRTLRLIHYAAWLARRWDDPAFPAAFPWFNTHRY
WEARVLELREQIGAMQEGPLWPV

Specific function: Probably involved in the extracytoplasmic stress response [H]

COG id: COG2334

COG function: function code R; Putative homoserine kinase type II (protein kinase fold)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdoA family [H]

Homologues:

Organism=Escherichia coli, GI1790290, Length=322, Percent_Identity=43.4782608695652, Blast_Score=273, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002575
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01636 APH [H]

EC number: NA

Molecular weight: Translated: 38436; Mature: 38436

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGMTDATSAPASPASPPFAGLTPECVLDALDSVLMPAGLRTDGRLLALNSYENRVYQVG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEE
IEDGPPVVAKFYRPARWSDDAILEEHAFVAELAAREIPAVPARAFDGRTLHAFDGFRFSI
CCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEE
FERRGGRAPDLDRSDTLEWLGRFIGRIHAVGATQPYVARPVLDINTFGYEPRDYLLAHDF
EHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCCCCCHHHEEECCC
IPDDVRPAYATAVALALEGVEAAFERAGEIRLLRTHGDCHPSNVLWTDAGPHFVDFDDSR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCEECCCCCC
MSPAVQDLWLLLPGDREGASRALADLLAGYEDFCEFEPRELHLVEALRTLRLIHYAAWLA
CCHHHHHEEEECCCCCCHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RRWDDPAFPAAFPWFNTHRYWEARVLELREQIGAMQEGPLWPV
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRGMTDATSAPASPASPPFAGLTPECVLDALDSVLMPAGLRTDGRLLALNSYENRVYQVG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEE
IEDGPPVVAKFYRPARWSDDAILEEHAFVAELAAREIPAVPARAFDGRTLHAFDGFRFSI
CCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEE
FERRGGRAPDLDRSDTLEWLGRFIGRIHAVGATQPYVARPVLDINTFGYEPRDYLLAHDF
EHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCCCCCHHHEEECCC
IPDDVRPAYATAVALALEGVEAAFERAGEIRLLRTHGDCHPSNVLWTDAGPHFVDFDDSR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCEECCCCCC
MSPAVQDLWLLLPGDREGASRALADLLAGYEDFCEFEPRELHLVEALRTLRLIHYAAWLA
CCHHHHHEEEECCCCCCHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RRWDDPAFPAAFPWFNTHRYWEARVLELREQIGAMQEGPLWPV
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]