| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116691076
Identifier: 116691076
GI number: 116691076
Start: 3373160
End: 3373894
Strand: Reverse
Name: 116691076
Synonym: Bcen2424_3058
Alternate gene names: NA
Gene position: 3373894-3373160 (Counterclockwise)
Preceding gene: 116691077
Following gene: 116691067
Centisome position: 96.84
GC content: 69.66
Gene sequence:
>735_bases GTGAACGCGCCCGAAACGATCGACCCGCCCAAGACGGGCATGCCGCGCGCCGGCGTCACCGTGCTGCACCCGGCGGGCCG CCCGCTGAACGACGACGAACTGGCCGCGCGCCGCCAGCGCTCGCGCCGCGCGACCTTCATCAAGTGGCTGCGCAAGGTGC ACGGCTGGGTCGGGCTGTGGGGCGCGGTACTCGGGCTGCTGTTCGGCGTGACCGGCGTGCTGCTGAACCACCGCGCGCCG CCGCTGAAGATTTCGACCGGCGAGCCGCAGGTCGAGGAGCTGCAGATCGCGCTGCCGGACCCGGTGCCGAAAACGCCCGC CGCGATGACGAAGTGGCTGCAGCAGGAACTGCATTTCGACGGCAAGCCGGGCCGCATGCGCAAGGAGCCCGCGCAGGCCG TCGCGTGGGGCGACAAGCGCGTGATGCAGCCCGAGCACTGGCAATTCGGCGTGTTCGGGCCGCACCAGAACCTGCAGGCC GAATACTGGGTCGGCAACGGCTACGTGTCGGTGAAGCGCACCGGCAACACGTTCCTGACGACGCTGAACAACCTGCATCG CGGCGTCGGGATGAATCTCGGCTGGGTGCTGCTGATGGATACGATCGCGGGTTCGCTGATCCTGCTGTCGCTGACGGGCG TGCTGCTGTGGACCGAGCTGAACAAGCGCCGCACGGTCGGCGTCGTGCTGGTGGTCGGTTCGGTTGCCGCGGCGCTCGCT GCCGGCCTGACCTGA
Upstream 100 bases:
>100_bases TTTCGATTTATGTAATGATATCCATTCTCATTTTCATGCTGACCGGGCGGTGCGCACTCCTGCGCGCCGCCCGTTGTTTT GAACGAATGGATACTTTCGC
Downstream 100 bases:
>100_bases CCGACTTTCGCGCCGGGTAGCGTCCGGCGTCCGGCGAGCATGGCCGCCCGCCGGCGCGGGTCAGAGCCCGCAGGCCGCGC CGCTGTTCGCCGCGATTTCG
Product: PepSY-associated TM helix domain-containing protein
Products: NA
Alternate protein names: PepSY-Associated TM Helix Domain Protein; PepSY-Associated TM Helix Family Protein; PepSY-Associated TM Helix
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MNAPETIDPPKTGMPRAGVTVLHPAGRPLNDDELAARRQRSRRATFIKWLRKVHGWVGLWGAVLGLLFGVTGVLLNHRAP PLKISTGEPQVEELQIALPDPVPKTPAAMTKWLQQELHFDGKPGRMRKEPAQAVAWGDKRVMQPEHWQFGVFGPHQNLQA EYWVGNGYVSVKRTGNTFLTTLNNLHRGVGMNLGWVLLMDTIAGSLILLSLTGVLLWTELNKRRTVGVVLVVGSVAAALA AGLT
Sequences:
>Translated_244_residues MNAPETIDPPKTGMPRAGVTVLHPAGRPLNDDELAARRQRSRRATFIKWLRKVHGWVGLWGAVLGLLFGVTGVLLNHRAP PLKISTGEPQVEELQIALPDPVPKTPAAMTKWLQQELHFDGKPGRMRKEPAQAVAWGDKRVMQPEHWQFGVFGPHQNLQA EYWVGNGYVSVKRTGNTFLTTLNNLHRGVGMNLGWVLLMDTIAGSLILLSLTGVLLWTELNKRRTVGVVLVVGSVAAALA AGLT >Mature_244_residues MNAPETIDPPKTGMPRAGVTVLHPAGRPLNDDELAARRQRSRRATFIKWLRKVHGWVGLWGAVLGLLFGVTGVLLNHRAP PLKISTGEPQVEELQIALPDPVPKTPAAMTKWLQQELHFDGKPGRMRKEPAQAVAWGDKRVMQPEHWQFGVFGPHQNLQA EYWVGNGYVSVKRTGNTFLTTLNNLHRGVGMNLGWVLLMDTIAGSLILLSLTGVLLWTELNKRRTVGVVLVVGSVAAALA AGLT
Specific function: Unknown
COG id: COG3295
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26758; Mature: 26758
Theoretical pI: Translated: 11.00; Mature: 11.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPETIDPPKTGMPRAGVTVLHPAGRPLNDDELAARRQRSRRATFIKWLRKVHGWVGLW CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAVLGLLFGVTGVLLNHRAPPLKISTGEPQVEELQIALPDPVPKTPAAMTKWLQQELHFD HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHCCC GKPGRMRKEPAQAVAWGDKRVMQPEHWQFGVFGPHQNLQAEYWVGNGYVSVKRTGNTFLT CCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCHHHH TLNNLHRGVGMNLGWVLLMDTIAGSLILLSLTGVLLWTELNKRRTVGVVLVVGSVAAALA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHH AGLT HCCC >Mature Secondary Structure MNAPETIDPPKTGMPRAGVTVLHPAGRPLNDDELAARRQRSRRATFIKWLRKVHGWVGLW CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAVLGLLFGVTGVLLNHRAPPLKISTGEPQVEELQIALPDPVPKTPAAMTKWLQQELHFD HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHCCC GKPGRMRKEPAQAVAWGDKRVMQPEHWQFGVFGPHQNLQAEYWVGNGYVSVKRTGNTFLT CCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCHHHH TLNNLHRGVGMNLGWVLLMDTIAGSLILLSLTGVLLWTELNKRRTVGVVLVVGSVAAALA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHH AGLT HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA