Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 116691048

GI number: 116691048

Start: 3343204

End: 3343983

Strand: Direct

Name: ydcN [C]

Synonym: Bcen2424_3030

Alternate gene names: 116691048

Gene position: 3343204-3343983 (Clockwise)

Preceding gene: 116691046

Following gene: 116691053

Centisome position: 95.96

GC content: 69.1

Gene sequence:

>780_bases
ATGGATTCAGACCTCATGCGTATCGGCCAGCGCATTCGCCGCCTGCGCCGGGAAGCGAAGAAGACGCTGCTGGAAGTGGC
GACCGAAGCGAACCTGTCGGTCGGGTTCCTGTCGCAGGTCGAGCGCCATCTGACGGGCATCTCGCTGTCGTCGCTCGTCA
ACGTCGCGAAGGCGCTGGGGGTGCCGCTCGGCACGCTGATCGAGCAGCCGCGCCAGGCGCAGCCCGATTCGCACGAGGGC
AGCCGCAAGCCGTACGCGCTCGACGCCGCGTCGCAGTGGTACGAGCGGCTGTCCACCACGTTCGACGGCAGCCAGATCAA
CGCGCTGAAGGTGCAGATGATGGAAGGCTACCGGTCGGAATGGGTCGCGCACGGCGGCGACGAATTCGTGTACGTGCTGG
CGGGCCGCGTCTGCTACACGGTCGGCAAGAAGAATTACCCGCTGACGCCCGGCGACTCGCTGCACTTCGACGCGCGCAAG
CGGCATCGCGTGGCCAATGTCGGCGACGGGCCGGCCGAGCTGATCACCGTCAGCACGCTGCCGCTGTTCGACGACAGTGA
TGCGGAATTCGTATCCGCGACGACGGAAATCAGGCAGTCGAAGCCCGGCGAGCCGCGCGTGAGCCGGCGCGCGCCGGCGT
CCAAGCGGGATGACCGCGACGCCGCCGCGGCACGGCCGTCCAGGGCAGGCGCTGCCGAAAAGAAGGGGGCGGCGAAGCCG
CGCGCCGCCGCCGGCAAACGCCCGGCGGCCGCGACTCCGGCGCGCAAGAAGAAACCGTAA

Upstream 100 bases:

>100_bases
CCCTCGCGACGCTGCGCGGTACAATGCGCCGGCCTCGCCGCCCCGGGCGGCCGCACGGCCCCTTTGCCCGCGCCCCGACT
CGTTGCCACGAAAGAGATTC

Downstream 100 bases:

>100_bases
CGGCTGGCCGGCGCGCACGCTGTTCCGCGCCTGCTACTTGCCTGCTACTTGCCGACTACTCGCCGATCGCGAGCGCCTGC
GCGACGGCCTGGATCCGCGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Cupin Domain Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Protein; Transcriptional Regulator Xre Family

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIEQPRQAQPDSHEG
SRKPYALDAASQWYERLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAGRVCYTVGKKNYPLTPGDSLHFDARK
RHRVANVGDGPAELITVSTLPLFDDSDAEFVSATTEIRQSKPGEPRVSRRAPASKRDDRDAAAARPSRAGAAEKKGAAKP
RAAAGKRPAAATPARKKKP

Sequences:

>Translated_259_residues
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIEQPRQAQPDSHEG
SRKPYALDAASQWYERLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAGRVCYTVGKKNYPLTPGDSLHFDARK
RHRVANVGDGPAELITVSTLPLFDDSDAEFVSATTEIRQSKPGEPRVSRRAPASKRDDRDAAAARPSRAGAAEKKGAAKP
RAAAGKRPAAATPARKKKP
>Mature_259_residues
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIEQPRQAQPDSHEG
SRKPYALDAASQWYERLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAGRVCYTVGKKNYPLTPGDSLHFDARK
RHRVANVGDGPAELITVSTLPLFDDSDAEFVSATTEIRQSKPGEPRVSRRAPASKRDDRDAAAARPSRAGAAEKKGAAKP
RAAAGKRPAAATPARKKKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28228; Mature: 28228

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
VPLGTLIEQPRQAQPDSHEGSRKPYALDAASQWYERLSTTFDGSQINALKVQMMEGYRSE
CCHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
WVAHGGDEFVYVLAGRVCYTVGKKNYPLTPGDSLHFDARKRHRVANVGDGPAELITVSTL
HHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHEEEEEEC
PLFDDSDAEFVSATTEIRQSKPGEPRVSRRAPASKRDDRDAAAARPSRAGAAEKKGAAKP
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHCCCCCC
RAAAGKRPAAATPARKKKP
CHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
VPLGTLIEQPRQAQPDSHEGSRKPYALDAASQWYERLSTTFDGSQINALKVQMMEGYRSE
CCHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
WVAHGGDEFVYVLAGRVCYTVGKKNYPLTPGDSLHFDARKRHRVANVGDGPAELITVSTL
HHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHEEEEEEC
PLFDDSDAEFVSATTEIRQSKPGEPRVSRRAPASKRDDRDAAAARPSRAGAAEKKGAAKP
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHCCCCCC
RAAAGKRPAAATPARKKKP
CHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA