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The map label for this gene is ycgR1 [H]

Identifier: 116691034

GI number: 116691034

Start: 3330041

End: 3330796

Strand: Reverse

Name: ycgR1 [H]

Synonym: Bcen2424_3016

Alternate gene names: 116691034

Gene position: 3330796-3330041 (Counterclockwise)

Preceding gene: 116691035

Following gene: 116691033

Centisome position: 95.61

GC content: 68.52

Gene sequence:

>756_bases
ATGAATATCGAAACGTCGACGGACCCCAGCCTGGATGCAGGCCACTCCGGGCCCGACTATGCCCGCCGCAATCCGCTGGA
AATCGGCGTGCAGCTGCGCAACCTGGTGAATCGCGGCGATTTCCTGACCGTGCAGTACCCGGGTGGCCAGCTCGTCACGC
GTCTGCTCGAGGTCGACGTCGGCGCGCGGACGTTCACGTTCGACTGGGGCGCGCTGTCCGAGCAGAACGCCGGCATCCTC
GGCGCGTCGCACTGCACGTTCGCGGCCTCGCCGGAGGGCGTGCGCGTCGAATTCACCACGGGCACGCCGCGCGAGACGCG
CTACGAGGGGCTGCCCGCGTTCGTCGCCGATTTCCCCGACGTGCTGGTCTGCATCCAGCGTCGCGAATATTTCCGCGTGG
ACGCGCCGATCGTCGATCCGTTCCTGTGCCGCGGCAAGCTGCCGGACGGCGAAAGCTTCCTGTTCGAGGTGCACAACCTG
TCGCTCGGCGGCGTGGGGCTGCGCACGGCCGACGAGCGCGTCGAGGCGCTCGAGGTCGGCACGCTGCTGCCGGACGTCGA
ACTCGAGCTGACGGGCCACGGCAAGCTGTCGCTCGACCTGCAACTGGTGTCGCAACGTTCGACGCAGATGCCGAACGGGT
CGCGCCGCTACCAGCTCGGCTTCCGCTACATGTCGCTGCCGGGCAGCGCGGAGAACACGCTGCAGCGGCTGATCACCCAG
CTCGAAATGAAGCGCCGCTCGCTCGCGCGGGCCTGA

Upstream 100 bases:

>100_bases
CCGCTAAGTGTGAGAGACCTGCGACCGGGCCCCCGTTCTGGCCCGGTTTTATTGCGCACCGGTTGCCCCGGGCGCCCATG
ACAAGAAAGACCGGCTAGCC

Downstream 100 bases:

>100_bases
CGCGCACCCGGCGCCGGCCCCGTCCGGGCCGCCCGCGCAGCGCCGCCGGCACCCTTCGCCGGCCGCTTCGAACGGCGACG
CACGCCGGTGCGCCGCGCGT

Product: YcgR family protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNIETSTDPSLDAGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVQYPGGQLVTRLLEVDVGARTFTFDWGALSEQNAGIL
GASHCTFAASPEGVRVEFTTGTPRETRYEGLPAFVADFPDVLVCIQRREYFRVDAPIVDPFLCRGKLPDGESFLFEVHNL
SLGGVGLRTADERVEALEVGTLLPDVELELTGHGKLSLDLQLVSQRSTQMPNGSRRYQLGFRYMSLPGSAENTLQRLITQ
LEMKRRSLARA

Sequences:

>Translated_251_residues
MNIETSTDPSLDAGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVQYPGGQLVTRLLEVDVGARTFTFDWGALSEQNAGIL
GASHCTFAASPEGVRVEFTTGTPRETRYEGLPAFVADFPDVLVCIQRREYFRVDAPIVDPFLCRGKLPDGESFLFEVHNL
SLGGVGLRTADERVEALEVGTLLPDVELELTGHGKLSLDLQLVSQRSTQMPNGSRRYQLGFRYMSLPGSAENTLQRLITQ
LEMKRRSLARA
>Mature_251_residues
MNIETSTDPSLDAGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVQYPGGQLVTRLLEVDVGARTFTFDWGALSEQNAGIL
GASHCTFAASPEGVRVEFTTGTPRETRYEGLPAFVADFPDVLVCIQRREYFRVDAPIVDPFLCRGKLPDGESFLFEVHNL
SLGGVGLRTADERVEALEVGTLLPDVELELTGHGKLSLDLQLVSQRSTQMPNGSRRYQLGFRYMSLPGSAENTLQRLITQ
LEMKRRSLARA

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=240, Percent_Identity=31.6666666666667, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27755; Mature: 27755

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIETSTDPSLDAGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVQYPGGQLVTRLLEVDV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
GARTFTFDWGALSEQNAGILGASHCTFAASPEGVRVEFTTGTPRETRYEGLPAFVADFPD
CCEEEEEECCCCCCCCCCEEECCCEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHCCHH
VLVCIQRREYFRVDAPIVDPFLCRGKLPDGESFLFEVHNLSLGGVGLRTADERVEALEVG
HHHHHHCCCEEEECCCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
TLLPDVELELTGHGKLSLDLQLVSQRSTQMPNGSRRYQLGFRYMSLPGSAENTLQRLITQ
CCCCCCEEEEECCCEEEEEEEEEHHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHH
LEMKRRSLARA
HHHHHHHHCCC
>Mature Secondary Structure
MNIETSTDPSLDAGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVQYPGGQLVTRLLEVDV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
GARTFTFDWGALSEQNAGILGASHCTFAASPEGVRVEFTTGTPRETRYEGLPAFVADFPD
CCEEEEEECCCCCCCCCCEEECCCEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHCCHH
VLVCIQRREYFRVDAPIVDPFLCRGKLPDGESFLFEVHNLSLGGVGLRTADERVEALEVG
HHHHHHCCCEEEECCCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
TLLPDVELELTGHGKLSLDLQLVSQRSTQMPNGSRRYQLGFRYMSLPGSAENTLQRLITQ
CCCCCCEEEEECCCEEEEEEEEEHHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHH
LEMKRRSLARA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA