| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is ybeT [C]
Identifier: 116690921
GI number: 116690921
Start: 3207861
End: 3208718
Strand: Direct
Name: ybeT [C]
Synonym: Bcen2424_2903
Alternate gene names: 116690921
Gene position: 3207861-3208718 (Clockwise)
Preceding gene: 116690920
Following gene: 116690922
Centisome position: 92.08
GC content: 75.76
Gene sequence:
>858_bases ATGAGACACGCGATGCAACCGATCCGGACGATGCGGCCCGCCGAAACCGGCTTCGCCGCCGCCGCGCAGCGCGTGCTGCG CGCGAAACTCCCGCCGGCCGCGCTGCTCGCGGCGGCGGCCGTGACCGTCGCGGCCGTCGTCGCGGCGACCGGCCTGCGCG GCGCCGGCCCCGCGCCGAGCGCCGCGCAGCTCGACGAATGGCAGGCGATGGTCACGCAGGCGACCGAGCCGCATGCGCTG GCCCAGTTGCGCACGCTCGCGCGGCGCGGCTCGGGCGCCGCGCAGGCGGCGCTCGGCATCGCGCTCATCGATGCACATGA GCCGGGGCTGCGCGACGAGGGGCGCGGCTGGCTGGAAACGGCCGCGGCGGCGGAGGGCAAGGCCGACGCGCCGGCCGCGC GGCGCGCGCAGCTTGCGCTCGGCAAGGCGTTGCTGCTCGGCAGCGGCGACATTCCGAAGGACTATGTGCGCGCCCGCGCG CTGCTCGGCGCCGCGGCCGAACAGGGTGACCCGGCCGCCGCGTACTACCTCGGGCTGATCTACCGCAGCGGCTACGGCAT CGCGGCCGACCCGGTGCAGGCCGCGCACTGGTTCGACATCGCATCGCGCGCGGACCTCCCCGCCGCCGACTTCATGCTCG CGAACGCGTACCGCGACGGCAGTGGCGTGCCGCGCGACGAGGTGCGCGCGCTCGCGCTGTATCGCCGGGCCGCCGAGCAC GAACTGCCGGAAGCCGTGCAGACGCTCGCGATGGCCTATCGCAACGGCGAACTCGGGCTTCGGCCCGACGCGGACGAGTT CCACGCGCAGTGGATCGAGACCGCGCACGCGCTGAAGCACCCGGTCGTCGCGCCGTGA
Upstream 100 bases:
>100_bases TCGGCGACGCGGCGGCGGCCGGCCTGACCGGCATCACGCAGGTCGCGGCCGACGACGGCTCGGGCAAGAACCTCGCGACC TACGAAATCGACCTCACGCA
Downstream 100 bases:
>100_bases TGGCTGTTCGGCTGGGGGAGCGCGTGGGCGTGACCTGGCCGAACGGTGGTTGCGTCGTATGCGTCATCTGCGAGCCGTCG GCGGCGCACCAATCCTCGTT
Product: Sel1 domain-containing protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat-Like Protein; Sel1 Domain Protein Repeat-Containing Protein; TPR Repeat Protein SEL1 Subfamily; TPR Repeat SEL1 Subfamily
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MRHAMQPIRTMRPAETGFAAAAQRVLRAKLPPAALLAAAAVTVAAVVAATGLRGAGPAPSAAQLDEWQAMVTQATEPHAL AQLRTLARRGSGAAQAALGIALIDAHEPGLRDEGRGWLETAAAAEGKADAPAARRAQLALGKALLLGSGDIPKDYVRARA LLGAAAEQGDPAAAYYLGLIYRSGYGIAADPVQAAHWFDIASRADLPAADFMLANAYRDGSGVPRDEVRALALYRRAAEH ELPEAVQTLAMAYRNGELGLRPDADEFHAQWIETAHALKHPVVAP
Sequences:
>Translated_285_residues MRHAMQPIRTMRPAETGFAAAAQRVLRAKLPPAALLAAAAVTVAAVVAATGLRGAGPAPSAAQLDEWQAMVTQATEPHAL AQLRTLARRGSGAAQAALGIALIDAHEPGLRDEGRGWLETAAAAEGKADAPAARRAQLALGKALLLGSGDIPKDYVRARA LLGAAAEQGDPAAAYYLGLIYRSGYGIAADPVQAAHWFDIASRADLPAADFMLANAYRDGSGVPRDEVRALALYRRAAEH ELPEAVQTLAMAYRNGELGLRPDADEFHAQWIETAHALKHPVVAP >Mature_285_residues MRHAMQPIRTMRPAETGFAAAAQRVLRAKLPPAALLAAAAVTVAAVVAATGLRGAGPAPSAAQLDEWQAMVTQATEPHAL AQLRTLARRGSGAAQAALGIALIDAHEPGLRDEGRGWLETAAAAEGKADAPAARRAQLALGKALLLGSGDIPKDYVRARA LLGAAAEQGDPAAAYYLGLIYRSGYGIAADPVQAAHWFDIASRADLPAADFMLANAYRDGSGVPRDEVRALALYRRAAEH ELPEAVQTLAMAYRNGELGLRPDADEFHAQWIETAHALKHPVVAP
Specific function: Unknown
COG id: COG0790
COG function: function code R; FOG: TPR repeat, SEL1 subfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29844; Mature: 29844
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHAMQPIRTMRPAETGFAAAAQRVLRAKLPPAALLAAAAVTVAAVVAATGLRGAGPAPS CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC AAQLDEWQAMVTQATEPHALAQLRTLARRGSGAAQAALGIALIDAHEPGLRDEGRGWLET HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCCCCCCCHHHHH AAAAEGKADAPAARRAQLALGKALLLGSGDIPKDYVRARALLGAAAEQGDPAAAYYLGLI HHHCCCCCCCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH YRSGYGIAADPVQAAHWFDIASRADLPAADFMLANAYRDGSGVPRDEVRALALYRRAAEH HHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH ELPEAVQTLAMAYRNGELGLRPDADEFHAQWIETAHALKHPVVAP HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRHAMQPIRTMRPAETGFAAAAQRVLRAKLPPAALLAAAAVTVAAVVAATGLRGAGPAPS CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC AAQLDEWQAMVTQATEPHALAQLRTLARRGSGAAQAALGIALIDAHEPGLRDEGRGWLET HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCCCCCCCHHHHH AAAAEGKADAPAARRAQLALGKALLLGSGDIPKDYVRARALLGAAAEQGDPAAAYYLGLI HHHCCCCCCCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH YRSGYGIAADPVQAAHWFDIASRADLPAADFMLANAYRDGSGVPRDEVRALALYRRAAEH HHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH ELPEAVQTLAMAYRNGELGLRPDADEFHAQWIETAHALKHPVVAP HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA