| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is cpdB [H]
Identifier: 116690920
GI number: 116690920
Start: 3205795
End: 3207864
Strand: Direct
Name: cpdB [H]
Synonym: Bcen2424_2902
Alternate gene names: 116690920
Gene position: 3205795-3207864 (Clockwise)
Preceding gene: 116690912
Following gene: 116690921
Centisome position: 92.02
GC content: 67.39
Gene sequence:
>2070_bases ATGCGTCTCCCCCCGCTTTCCCGCCGCCACGTGCCGGCCGCCGCCGCGCTCGCCAGCCTCGCCTTCGTCCTCGCCGGCTG CGGCGGCGACGACGTCACCGCCACGCCGCCGGCTCAGCCGGAGGCCCCGGCGCCCGTCGGCACGACGGCGACGCTCGCGC TGCTCGAGACGACCGACCTGCACACCAACGTGCTGTCGTACGACTATTTCAAGCTCGCCGCCGACAATTCGCTCGGCTTC GAGCGCGTGTCGACGCTGATCGCGCAGGCGCGCAAGCAGTACCCGAACACGCTGCTGCTCGACAACGGCGACACGATCCA GGGCACCGCGCTGTCGGACTACCAGGCGCTCGTGAAGCCGGTCGGCTGCGACCAGACGCTCGCGATCTACAAGGTGATGA ACGCCGCGAAGTTCGACGGCGGCGGGATCGGCAACCATGAATTCAACTACGGGCTGCCGTACCTGTCGCAGGTGACCGGC AACACGTTCGAGGTCGACGGCCTGCCGGCGCCGGCCCAGCAGAAGAAGTGCGCGGGCCCGAACTTCCCGCAGGTGCTCGC GAACGTGATCAGCGCGAAGACCAACGCGCCGCTGTTCACGCCGTACACGATCCTGACGCGCACGGTGACGGCCACGACGC CGGACGGCAAGACGGTCAGCGCGCCCGTGAAGATCGGCATCATCGGCTTCACGCCGCCCGCGATCATGAACTGGGACAAG CGCTGGCTCGACGGCAAGGTCTACACGACCGGGCTGAAGGAAGCGGCCGAGAAGTACATTCCGGAGATGCGCGCGAAGGG CGCCGATCTCGTCGTCGCGATCTCGCACGGCGGCCTCGACAATTCCGCGTATTCGCCGACGATGGAAAACGGCAGCTGGT GGCTGTCGAAGGTGTCCGGCATCGACGCGATGCTGATCGGCCACTCGCACCAGGTGTTCCCGGACGCGAACAGCACCGTG GCGCAGTTCAACCTGCCGGGCGTCGACAAGGTCAAGGGCACCGTCAACGGCGTGCCGACCGTGATGGCCAACTACTGGGG CAAGCATCTCGGCGTGATCAAGCTCGGCCTGAAGTTCGACGGCAAGACCTGGGCCGTCGACAAGTCGCAGACGACCGTCG AGGCGCGGCCGATCCAGAATGCCGACAAGAGCTACGTCGCGGCCGACCCGTCGGTTTCCGCCGCGATCGCGGCCGAGCAC CAAGCGACGATCGACTACGTGAAGACGCCGATCGGCTCCACCGACTACCGGATGAACTCGTACTTCGCGGACGTCGGCGA TCCGGGCGCGATCCAGATCGTCAACGAGGCGCAGGCCGACTACGTGAAGACCTACGTGCAGGCGAACCTGCCGCAGTACG CGTCGCTGCCGGTGCTGTCGGTCAGCGCGCCGTTCAAGAGCGGCTTCGGCGGCGGCACCGACTACACCGACGTCGCGCCG GGCGCGCTCGCGATCAACAACGCGGCCGACCTGTACCTGTATCCGAACACCGTGTACGCGGTGAAGGTGAGCGGCGCCGA CGTGAAGAACTGGCTCGAGACGGCCGCCAAGCGCTTCAACACGATCGACCCGACCAAGGCCACCGTGCAGCCGCTCGTCA GCACCTTCCCCGGCTACAACTTCGACATGTTCACGTCGGCCGATCTCGCGTATGAAATCGACGTCACGCAGCCGGTCGGC AACCGGATCAGGAACCTGACGTACAAGGGCGTGGCGATCGACCCGAACGCGCAGTTCATCGTCGCGACCAACAATTACCG TGCGAGCGGCGGCGGCAATTTCCCGGGCCTCGACGGCAGCAAGACGATCTTCGCGTCGCCCGATGCGAACCGCGACGTGC TGATCGCGTTCATCAAGAAGCGCGGCGCGATCACGCGCGCGGCCGCCGGCGCGCAGCGCAGCTGGCGCTTCACGAAGCTC GCGAGCTCGGTCGCGCACGTGCAGTTCGCGTCCGCGCCGAACCGCCTCGGCGACGCGGCGGCGGCCGGCCTGACCGGCAT CACGCAGGTCGCGGCCGACGACGGCTCGGGCAAGAACCTCGCGACCTACGAAATCGACCTCACGCAATGA
Upstream 100 bases:
>100_bases TCGATACTCTCACGCGCCGCACCTCAGGCCGACGGCGCGCCGCGCCGCCATTCGTGCGTACCTCGCGTTTCATAAAACAG AACACCGAACAGGACAACCG
Downstream 100 bases:
>100_bases GACACGCGATGCAACCGATCCGGACGATGCGGCCCGCCGAAACCGGCTTCGCCGCCGCCGCGCAGCGCGTGCTGCGCGCG AAACTCCCGCCGGCCGCGCT
Product: 5'-nucleotidase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 689; Mature: 689
Protein sequence:
>689_residues MRLPPLSRRHVPAAAALASLAFVLAGCGGDDVTATPPAQPEAPAPVGTTATLALLETTDLHTNVLSYDYFKLAADNSLGF ERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKPVGCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTG NTFEVDGLPAPAQQKKCAGPNFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK RWLDGKVYTTGLKEAAEKYIPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVSGIDAMLIGHSHQVFPDANSTV AQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFDGKTWAVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEH QATIDYVKTPIGSTDYRMNSYFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNTIDPTKATVQPLVSTFPGYNFDMFTSADLAYEIDVTQPVG NRIRNLTYKGVAIDPNAQFIVATNNYRASGGGNFPGLDGSKTIFASPDANRDVLIAFIKKRGAITRAAAGAQRSWRFTKL ASSVAHVQFASAPNRLGDAAAAGLTGITQVAADDGSGKNLATYEIDLTQ
Sequences:
>Translated_689_residues MRLPPLSRRHVPAAAALASLAFVLAGCGGDDVTATPPAQPEAPAPVGTTATLALLETTDLHTNVLSYDYFKLAADNSLGF ERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKPVGCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTG NTFEVDGLPAPAQQKKCAGPNFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK RWLDGKVYTTGLKEAAEKYIPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVSGIDAMLIGHSHQVFPDANSTV AQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFDGKTWAVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEH QATIDYVKTPIGSTDYRMNSYFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNTIDPTKATVQPLVSTFPGYNFDMFTSADLAYEIDVTQPVG NRIRNLTYKGVAIDPNAQFIVATNNYRASGGGNFPGLDGSKTIFASPDANRDVLIAFIKKRGAITRAAAGAQRSWRFTKL ASSVAHVQFASAPNRLGDAAAAGLTGITQVAADDGSGKNLATYEIDLTQ >Mature_689_residues MRLPPLSRRHVPAAAALASLAFVLAGCGGDDVTATPPAQPEAPAPVGTTATLALLETTDLHTNVLSYDYFKLAADNSLGF ERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKPVGCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTG NTFEVDGLPAPAQQKKCAGPNFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK RWLDGKVYTTGLKEAAEKYIPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVSGIDAMLIGHSHQVFPDANSTV AQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFDGKTWAVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEH QATIDYVKTPIGSTDYRMNSYFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNTIDPTKATVQPLVSTFPGYNFDMFTSADLAYEIDVTQPVG NRIRNLTYKGVAIDPNAQFIVATNNYRASGGGNFPGLDGSKTIFASPDANRDVLIAFIKKRGAITRAAAGAQRSWRFTKL ASSVAHVQFASAPNRLGDAAAAGLTGITQVAADDGSGKNLATYEIDLTQ
Specific function: This bifunctional enzyme catalyzes two consecutive reactions during ribonucleic acid degradation. Converts a 2',3'- cyclic nucleotide to a 3'-nucleotide and then the 3'-nucleotide to the corresponding nucleoside and phosphate [H]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1790658, Length=670, Percent_Identity=42.3880597014925, Blast_Score=467, Evalue=1e-132,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR006294 - InterPro: IPR004843 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.6; =3.1.4.16 [H]
Molecular weight: Translated: 73040; Mature: 73040
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00786 5_NUCLEOTIDASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPPLSRRHVPAAAALASLAFVLAGCGGDDVTATPPAQPEAPAPVGTTATLALLETTDL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC HTNVLSYDYFKLAADNSLGFERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKP HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHCC VGCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTGNTFEVDGLPAPAQQKKCAGP CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHCCCCC NFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK CHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCEEECCEEEEEEECCCHHHCCCCH RWLDGKVYTTGLKEAAEKYIPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVSG HHCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHCC IDAMLIGHSHQVFPDANSTVAQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFD CEEEEECCCCEECCCCCCCEEEECCCCCHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEEC GKTWAVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEHQATIDYVKTPIGSTDYRMNS CCEEEECCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCHHHHHHHHCCCCCCCCEECC YFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP EEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNTIDPTKATVQPLVSTFPGYN CEEEECCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC FDMFTSADLAYEIDVTQPVGNRIRNLTYKGVAIDPNAQFIVATNNYRASGGGNFPGLDGS EEEEECCCEEEEEECCCHHHHHHHCCEEEEEEECCCCEEEEEECCEECCCCCCCCCCCCC KTIFASPDANRDVLIAFIKKRGAITRAAAGAQRSWRFTKLASSVAHVQFASAPNRLGDAA CEEEECCCCCCCEEEEEEHHCCCCHHHHCCCCCCCHHHHHHHHHHHEEECCCCCHHHHHH AAGLTGITQVAADDGSGKNLATYEIDLTQ HHCCCHHHHEECCCCCCCEEEEEEEEECC >Mature Secondary Structure MRLPPLSRRHVPAAAALASLAFVLAGCGGDDVTATPPAQPEAPAPVGTTATLALLETTDL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC HTNVLSYDYFKLAADNSLGFERVSTLIAQARKQYPNTLLLDNGDTIQGTALSDYQALVKP HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHCC VGCDQTLAIYKVMNAAKFDGGGIGNHEFNYGLPYLSQVTGNTFEVDGLPAPAQQKKCAGP CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHCCCCC NFPQVLANVISAKTNAPLFTPYTILTRTVTATTPDGKTVSAPVKIGIIGFTPPAIMNWDK CHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCEEECCEEEEEEECCCHHHCCCCH RWLDGKVYTTGLKEAAEKYIPEMRAKGADLVVAISHGGLDNSAYSPTMENGSWWLSKVSG HHCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHCC IDAMLIGHSHQVFPDANSTVAQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVIKLGLKFD CEEEEECCCCEECCCCCCCEEEECCCCCHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEEC GKTWAVDKSQTTVEARPIQNADKSYVAADPSVSAAIAAEHQATIDYVKTPIGSTDYRMNS CCEEEECCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCHHHHHHHHCCCCCCCCEECC YFADVGDPGAIQIVNEAQADYVKTYVQANLPQYASLPVLSVSAPFKSGFGGGTDYTDVAP EEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC GALAINNAADLYLYPNTVYAVKVSGADVKNWLETAAKRFNTIDPTKATVQPLVSTFPGYN CEEEECCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC FDMFTSADLAYEIDVTQPVGNRIRNLTYKGVAIDPNAQFIVATNNYRASGGGNFPGLDGS EEEEECCCEEEEEECCCHHHHHHHCCEEEEEEECCCCEEEEEECCEECCCCCCCCCCCCC KTIFASPDANRDVLIAFIKKRGAITRAAAGAQRSWRFTKLASSVAHVQFASAPNRLGDAA CEEEECCCCCCCEEEEEEHHCCCCHHHHCCCCCCCHHHHHHHHHHHEEECCCCCHHHHHH AAGLTGITQVAADDGSGKNLATYEIDLTQ HHCCCHHHHEECCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3005231; 7610040; 9278503; 2172762; 9298646 [H]