Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116690916

Identifier: 116690916

GI number: 116690916

Start: 3201692

End: 3202315

Strand: Reverse

Name: 116690916

Synonym: Bcen2424_2898

Alternate gene names: NA

Gene position: 3202315-3201692 (Counterclockwise)

Preceding gene: 116690917

Following gene: 116690915

Centisome position: 91.92

GC content: 73.72

Gene sequence:

>624_bases
ATGCCACGAATCCTTGACCGCGCGCTGCGCCCGGCCGCGGCCGCGCTTGCCGTGCTGACGCTCGCGCTGGCGGCCGGCTG
CGCCGGCAACGACGCGGTGCTGTCGAACATCCGCTACGACCTCGGGCCTGCCTCGTCGGTGACGACCACCGGTTCGGGCC
CCGCGCTGAAGGTGCTCGACGTTGCCGCGCCCGACGCACTCGATTCGGACAAGTTCGCGTACCGCCTCGCGTACGCGGAT
GCGCAGCACGTGGCCGTCTATCGCGACAGCCGCTGGACCGCGCCGCCCGCGCAACTGCTCACGCAGCGGCTGCGCGGCGC
GCTGTCGTCGCGCGGCACGGTGCTCGAAGGCGCCGACGGCGTGCGTGCGCCGACCCTCAAGGTCGACCTCAGCGAATTCG
AACAGGTCTTCGACGGGCAGTCGCAAAGCCACGGCGCGGTCACCGCGCGCGCGACGCTGATGCTCGACGGCAAGGTGCTC
GGCCAGCGCACGTTCGTCGCGCGCGCGCCGTCGAGCACGCCCGACGCCGCCGGCGGCGCGCGTGCGCTCGCGGCGGCCAG
CGACGAACTCGTGTCGCAGATCGCCGCGTGGGTTGGCGTGCAGGCGTACGCGGGCACGCCGTGA

Upstream 100 bases:

>100_bases
CCCCGATCCGGGACGCCCCGCAGCAGTTGATCGATCGTCCGGCCGGGAACGGCCGGACAGGACGCCCATCGAAACCGGAC
ACATCATGCAGGAATACGCC

Downstream 100 bases:

>100_bases
CGCCCGACGTGCCGCCGCGATTGCATCCGCGATGAACGTGCCCGGCACGCATCGCGCGTCGCCGCTCGCGCGGCAGGCGT
TTGCCGCCTACGCGGCGCTG

Product: ABC-type uncharacterized transport system auxiliary component-like protein

Products: NA

Alternate protein names: ABC-Type Transport System Auxiliary Component-Like Protein; Transcriptional Regulator; ABC-Type Transporter Auxiliary Component; ABC-Type Transport System Auxiliary Component; Exported Protein

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MPRILDRALRPAAAALAVLTLALAAGCAGNDAVLSNIRYDLGPASSVTTTGSGPALKVLDVAAPDALDSDKFAYRLAYAD
AQHVAVYRDSRWTAPPAQLLTQRLRGALSSRGTVLEGADGVRAPTLKVDLSEFEQVFDGQSQSHGAVTARATLMLDGKVL
GQRTFVARAPSSTPDAAGGARALAAASDELVSQIAAWVGVQAYAGTP

Sequences:

>Translated_207_residues
MPRILDRALRPAAAALAVLTLALAAGCAGNDAVLSNIRYDLGPASSVTTTGSGPALKVLDVAAPDALDSDKFAYRLAYAD
AQHVAVYRDSRWTAPPAQLLTQRLRGALSSRGTVLEGADGVRAPTLKVDLSEFEQVFDGQSQSHGAVTARATLMLDGKVL
GQRTFVARAPSSTPDAAGGARALAAASDELVSQIAAWVGVQAYAGTP
>Mature_206_residues
PRILDRALRPAAAALAVLTLALAAGCAGNDAVLSNIRYDLGPASSVTTTGSGPALKVLDVAAPDALDSDKFAYRLAYADA
QHVAVYRDSRWTAPPAQLLTQRLRGALSSRGTVLEGADGVRAPTLKVDLSEFEQVFDGQSQSHGAVTARATLMLDGKVLG
QRTFVARAPSSTPDAAGGARALAAASDELVSQIAAWVGVQAYAGTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21299; Mature: 21168

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRILDRALRPAAAALAVLTLALAAGCAGNDAVLSNIRYDLGPASSVTTTGSGPALKVLD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCCCCEEEEE
VAAPDALDSDKFAYRLAYADAQHVAVYRDSRWTAPPAQLLTQRLRGALSSRGTVLEGADG
ECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCC
VRAPTLKVDLSEFEQVFDGQSQSHGAVTARATLMLDGKVLGQRTFVARAPSSTPDAAGGA
CCCCEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCEEEEEECCCCCCCCCCCH
RALAAASDELVSQIAAWVGVQAYAGTP
HHHHHHHHHHHHHHHHHHCCHHCCCCC
>Mature Secondary Structure 
PRILDRALRPAAAALAVLTLALAAGCAGNDAVLSNIRYDLGPASSVTTTGSGPALKVLD
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCCCCEEEEE
VAAPDALDSDKFAYRLAYADAQHVAVYRDSRWTAPPAQLLTQRLRGALSSRGTVLEGADG
ECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCC
VRAPTLKVDLSEFEQVFDGQSQSHGAVTARATLMLDGKVLGQRTFVARAPSSTPDAAGGA
CCCCEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCEEEEEECCCCCCCCCCCH
RALAAASDELVSQIAAWVGVQAYAGTP
HHHHHHHHHHHHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA