| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690915
Identifier: 116690915
GI number: 116690915
Start: 3200509
End: 3201660
Strand: Reverse
Name: 116690915
Synonym: Bcen2424_2897
Alternate gene names: NA
Gene position: 3201660-3200509 (Counterclockwise)
Preceding gene: 116690916
Following gene: 116690914
Centisome position: 91.9
GC content: 72.74
Gene sequence:
>1152_bases ATGAACGTGCCCGGCACGCATCGCGCGTCGCCGCTCGCGCGGCAGGCGTTTGCCGCCTACGCGGCGCTGATCGTCTATGC GTCGCTGTATCCGTTCGAAGGCTGGGTGTCGCTCGGCATCGGCCCGTTCGATTACCTGTTCGCGCCGATGCAGCGCTATG TGACCGCATTCGACGTAGTCACGAACGTACTCGGCTATCTGCCGTTCGGCGCGCTCGGCGTGCTCGCGCTGCATCCGCGC TGGCGCGGCGTGGCCGCGACGCTGATCGCGGGCGCGCTCGGCGTGCTGCTGTCGGGCACGATGGAAGCGCTGCAGACCTA CCTGCCGACGCGCGTCGCGTCGAATCTCGATCTCGGCGCCAACGCGCTCGGCGCGCTGCTGGGCGCGGCGCTCGCGGCGC CGGCCACCGGCGCGCTGCTCGACCGCGGCGCGCTGCGCCGGCTGCGCTTCGCGTGGCTGGAGCCCGACGGTTCGACGCCG CTGCTGCTCGCCGCGCTGTGGCCGTTCGCGATCGTGTTTCCGTCGCCGTTCCTGTTCGGCATCGGCGACTGGCCGGCCGC GCTGTGGGAGCGCGCCGACGCGTCGATGCAGGACGCGCTGCTCGCGTGGCTGCCGGCCGCATGGCGCGTCAGCGAATGGC CCGAGCGGGTCGACGGCTGGCTGTCCGATTCCGCATGGGAAGCCGTGCTCGGCGGGCTGATGCTGTTCGCCGCGCTGGCG ATCGCGTCGCTCGCGATGCGCGCGCGCGCGCCGCGCATCCGGCTGCTGATCGCGCTGGTGGTCGCCACGCTCGTGCTGAA GGCGGCCGCGACGTTCATGCAGTCGGCCACCGGCCTCGTCGTCGTGTGGGCGACGCCCGGCGCGCGGCTCGGCATCGAGC TTGGTTTCGCGGCGGCGCTCGTCGCGTTGCGCGTGCCGGCGACGTGGCGCGCGCTGCTCGCGGCGCTCGCGCTGCTGGCC GGCGTTGCGCTCGTGAACCTGCTGCCGGTCAATCCGTTCTTCGACTTCACGCTGTCGGGGTGGCGACAGGGCCGCTACGT GCACTTCAACAGCATCGCGCGCTGGCTCGCATGGATCTGGCCCTACGCGGCGCTGATCTGGCTCGGCCAGCGCGTCGAAC ACGCGTGGCTGCCGGCCGCGCTGCGCCGCTGA
Upstream 100 bases:
>100_bases GCCAGCGACGAACTCGTGTCGCAGATCGCCGCGTGGGTTGGCGTGCAGGCGTACGCGGGCACGCCGTGACGCCCGACGTG CCGCCGCGATTGCATCCGCG
Downstream 100 bases:
>100_bases TGCGACGGCCGGGGCCGTGCGGCGGCGGCCGTGCCGCGGGCAGCCGCGTGCGCCGGTCGCTATAATCGTCCGCATCCTCC GTTGCCGCCTCGCGCAACGG
Product: VanZ like protein
Products: NA
Alternate protein names: VanZ Like Protein; Transmembrane Protein
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MNVPGTHRASPLARQAFAAYAALIVYASLYPFEGWVSLGIGPFDYLFAPMQRYVTAFDVVTNVLGYLPFGALGVLALHPR WRGVAATLIAGALGVLLSGTMEALQTYLPTRVASNLDLGANALGALLGAALAAPATGALLDRGALRRLRFAWLEPDGSTP LLLAALWPFAIVFPSPFLFGIGDWPAALWERADASMQDALLAWLPAAWRVSEWPERVDGWLSDSAWEAVLGGLMLFAALA IASLAMRARAPRIRLLIALVVATLVLKAAATFMQSATGLVVVWATPGARLGIELGFAAALVALRVPATWRALLAALALLA GVALVNLLPVNPFFDFTLSGWRQGRYVHFNSIARWLAWIWPYAALIWLGQRVEHAWLPAALRR
Sequences:
>Translated_383_residues MNVPGTHRASPLARQAFAAYAALIVYASLYPFEGWVSLGIGPFDYLFAPMQRYVTAFDVVTNVLGYLPFGALGVLALHPR WRGVAATLIAGALGVLLSGTMEALQTYLPTRVASNLDLGANALGALLGAALAAPATGALLDRGALRRLRFAWLEPDGSTP LLLAALWPFAIVFPSPFLFGIGDWPAALWERADASMQDALLAWLPAAWRVSEWPERVDGWLSDSAWEAVLGGLMLFAALA IASLAMRARAPRIRLLIALVVATLVLKAAATFMQSATGLVVVWATPGARLGIELGFAAALVALRVPATWRALLAALALLA GVALVNLLPVNPFFDFTLSGWRQGRYVHFNSIARWLAWIWPYAALIWLGQRVEHAWLPAALRR >Mature_383_residues MNVPGTHRASPLARQAFAAYAALIVYASLYPFEGWVSLGIGPFDYLFAPMQRYVTAFDVVTNVLGYLPFGALGVLALHPR WRGVAATLIAGALGVLLSGTMEALQTYLPTRVASNLDLGANALGALLGAALAAPATGALLDRGALRRLRFAWLEPDGSTP LLLAALWPFAIVFPSPFLFGIGDWPAALWERADASMQDALLAWLPAAWRVSEWPERVDGWLSDSAWEAVLGGLMLFAALA IASLAMRARAPRIRLLIALVVATLVLKAAATFMQSATGLVVVWATPGARLGIELGFAAALVALRVPATWRALLAALALLA GVALVNLLPVNPFFDFTLSGWRQGRYVHFNSIARWLAWIWPYAALIWLGQRVEHAWLPAALRR
Specific function: Unknown
COG id: COG5652
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41252; Mature: 41252
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVPGTHRASPLARQAFAAYAALIVYASLYPFEGWVSLGIGPFDYLFAPMQRYVTAFDVV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHH TNVLGYLPFGALGVLALHPRWRGVAATLIAGALGVLLSGTMEALQTYLPTRVASNLDLGA HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH NALGALLGAALAAPATGALLDRGALRRLRFAWLEPDGSTPLLLAALWPFAIVFPSPFLFG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEC IGDWPAALWERADASMQDALLAWLPAAWRVSEWPERVDGWLSDSAWEAVLGGLMLFAALA CCCHHHHHHHHCCCHHHHHHHHHHCCHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH IASLAMRARAPRIRLLIALVVATLVLKAAATFMQSATGLVVVWATPGARLGIELGFAAAL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH VALRVPATWRALLAALALLAGVALVNLLPVNPFFDFTLSGWRQGRYVHFNSIARWLAWIW HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHH PYAALIWLGQRVEHAWLPAALRR HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNVPGTHRASPLARQAFAAYAALIVYASLYPFEGWVSLGIGPFDYLFAPMQRYVTAFDVV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHH TNVLGYLPFGALGVLALHPRWRGVAATLIAGALGVLLSGTMEALQTYLPTRVASNLDLGA HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH NALGALLGAALAAPATGALLDRGALRRLRFAWLEPDGSTPLLLAALWPFAIVFPSPFLFG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEC IGDWPAALWERADASMQDALLAWLPAAWRVSEWPERVDGWLSDSAWEAVLGGLMLFAALA CCCHHHHHHHHCCCHHHHHHHHHHCCHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH IASLAMRARAPRIRLLIALVVATLVLKAAATFMQSATGLVVVWATPGARLGIELGFAAAL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH VALRVPATWRALLAALALLAGVALVNLLPVNPFFDFTLSGWRQGRYVHFNSIARWLAWIW HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHH PYAALIWLGQRVEHAWLPAALRR HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA