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The map label for this gene is ltrA [H]

Identifier: 116690899

GI number: 116690899

Start: 3183283

End: 3184245

Strand: Direct

Name: ltrA [H]

Synonym: Bcen2424_2881

Alternate gene names: 116690899

Gene position: 3183283-3184245 (Clockwise)

Preceding gene: 116690890

Following gene: 116690900

Centisome position: 91.37

GC content: 68.43

Gene sequence:

>963_bases
ATGGACCTGAACGCGCTGACGCTGCTCGTCGAGATCCTCGACGCCGGCAATCTCAGCAAGGCCGCGCAGCGGCTCAAGAT
GAGCCGGGCGAACGTCAGCTACCGGCTCAACCAGCTCGAGCGCTCGATCGGCCAGCAGCTCGTGCGGCGCACGACGCGGC
GCATGGAGCCGACCGAGATCGGGCTGAAGCTGTACGAGCACGGCCGGCGCATCCGCAACGAGCTGCTCGCCGCGCAGGAA
TCGGTGACGACGCTCGGCCAGGACCTGCAGGGCCGCGTGCGGCTGTCGGTGCCGAGCGGCTACGGGCAGATCGTGATGTC
CGACTGGCTGCTCGCGTTCAAGCGGCGGCATCCGGGCATCGTGCTCGACGTGGTGTTCGAGAATCGCGTGGAAGACCTGA
TGCGCGACGAAGTCGACATCGCGATCCGCGTAATGTCCGAGCCGCCGCAGAACCTGGTCGCCCGCGACATGGGCGCGGTG
CGCTACGTCGCCTGCGCGTCGCCCGCGTTCGCGGCCGCGCACGGGATGCCGGCGAGCCTCGGCGCGCTGGCCGCCGCCCC
GGTCGTCACCGCGACGGTGATGGGCCGGCAGCTCCGGATCGCCGCGTATCTCGGCGACGAACGCCACGAGGTGCTGCTCG
AACCGACGCTGATTTCGGAGAACTTCCTGTTCCTGCGCCAGGCGATCCTCGCGGGCATCGGCGTCGGCATCGTGCCCGAC
TACGTGATGCAGGACGACCTGCGGCACGGCACCGTCGTCACGTCGCTCGATGCGTACCGGCTCAGCATCTTCGGTACCCA
CATGTACATGCTGTACATGCCGAACCGCCACCACACGCGCGCGACTTCCACGTTCATAGAGTTCATCCTCGAACAGGCCG
GAAAGACCGGCCGGGGCGGGCCCGGCGGGATGCGTCAGGGTTTCCTGACGGATGACAAGCCGCCGGGCACGCGGCGACAA
TAG

Upstream 100 bases:

>100_bases
CACCTTTACAAGCTGTCAAGTCTGACTTGACACTGAATGCTTTCGGACCGTTTCAGACCGCATCGATCCGATTAACGGGC
CGGATCAGGAGAGACCCCGC

Downstream 100 bases:

>100_bases
CGCGCCGGGGCGGGCCGCACCGTTGCGCCCGCACCGACGTAAACGTCAACGTCAACATCAACGCCGCCGTCTCCTTCGAA
TTCACTGCTGCCGAGGGTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRMEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQIVMSDWLLAFKRRHPGIVLDVVFENRVEDLMRDEVDIAIRVMSEPPQNLVARDMGAV
RYVACASPAFAAAHGMPASLGALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
YVMQDDLRHGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGGPGGMRQGFLTDDKPPGTRRQ

Sequences:

>Translated_320_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRMEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQIVMSDWLLAFKRRHPGIVLDVVFENRVEDLMRDEVDIAIRVMSEPPQNLVARDMGAV
RYVACASPAFAAAHGMPASLGALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
YVMQDDLRHGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGGPGGMRQGFLTDDKPPGTRRQ
>Mature_320_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRMEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQIVMSDWLLAFKRRHPGIVLDVVFENRVEDLMRDEVDIAIRVMSEPPQNLVARDMGAV
RYVACASPAFAAAHGMPASLGALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
YVMQDDLRHGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGGPGGMRQGFLTDDKPPGTRRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=26.3698630136986, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=27.3684210526316, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=24.0418118466899, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=25.5892255892256, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=22.7799227799228, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=21.4532871972318, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=285, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=32.6530612244898, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=255, Percent_Identity=25.0980392156863, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787128, Length=301, Percent_Identity=19.9335548172757, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35535; Mature: 35535

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRMEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQIVMSDWLLAFKRRHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEVDIAIRVMSEPPQNLVARDMGAVRYVACASPAFAAAHGMPASL
EEEHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHCHHHHHHHCCCHHHHHCCCCHHH
GALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
HHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCH
YVMQDDLRHGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGG
HHHHHCCCCCCEEEECHHHEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGGMRQGFLTDDKPPGTRRQ
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRMEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQIVMSDWLLAFKRRHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEVDIAIRVMSEPPQNLVARDMGAVRYVACASPAFAAAHGMPASL
EEEHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHCHHHHHHHCCCHHHHHCCCCHHH
GALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
HHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCH
YVMQDDLRHGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGG
HHHHHCCCCCCEEEECHHHEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGGMRQGFLTDDKPPGTRRQ
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]