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The map label for this gene is yegW [H]

Identifier: 116690845

GI number: 116690845

Start: 3125460

End: 3126194

Strand: Reverse

Name: yegW [H]

Synonym: Bcen2424_2825

Alternate gene names: 116690845

Gene position: 3126194-3125460 (Counterclockwise)

Preceding gene: 116690846

Following gene: 116690844

Centisome position: 89.73

GC content: 70.61

Gene sequence:

>735_bases
ATGGAAACCGGCTGGTCCGAACTGGCGCCCGACCCCCTCGACGACACGCCGCTCTATTTGCAGCTCGCCCGCAATCTGGC
GAGCGCGATCCACGCCGGCGCGTGGCGGGCCGGCGAGGCGCTGCCGTCGGAGCGGCTGCTGTCGGGGTCGGTCGGCGTGT
CGCGAATCACCGCGCGTCGTGCGCTCGCGCTGCTGGTCGAGCAGGGCCTGATCAAGCGAGCGCGCGGCGCGGGCAGCTTC
ATCACGCCGCGCGTCGCCGATCCGCTGTCGCGGCTCGTCGGCTTCACCGCGAAGATGCAGCAGCGCGGCTTCGTGCCCGA
TTCGGTGTGGCTGTCGCGCACGCTGCGCGCCGCGAGCCGTGACGAGCTCACGCATCTCGGCCTCGCGCCCGGCGCGACGG
TGGCGCGGCTCGAACGGCTGCGCCGCGCGGACGGCATCGTGATGGCCATCGAGCATTCGACGCTGCCGGCCGCGGTGGTG
CCCGATCCGCAGGCGCTCGGCGCGTCGCTGTACGAATACCTCGATACGCGCGGCATGACCGTCGTGCGCGCGCTGCAGCA
CTTTCGCGCGGCGAATGCCACGCACGCGATCGCGAAATGGATGGCGGTGAAGCCGGGCTCGGCATTGCTGGTGATCACGC
GCGTCGGCTACGGCGCCGACCAGCGTGCGATCGAAGTGACCGAAACGTATTGCCGCGACGACTACTACGACTTCGTCGCC
GAACTGAAACGCTGA

Upstream 100 bases:

>100_bases
TTCCGCGGCGCTAATACCAGTTCGTTGACTGGTATTATGGTGGTTATATAATGCGTTCACTTTCGACGGTCACGGATCGT
CGTCCGACACCCGGAGGCAC

Downstream 100 bases:

>100_bases
CGCGCGAGACTGCCCGCGCATCCCGCGCGATCGCGATGGAACGCAATCGCGCGCAATGAATCGCAACGGATTGGCACATC
ACGACGCGGACGCTCGCGTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
METGWSELAPDPLDDTPLYLQLARNLASAIHAGAWRAGEALPSERLLSGSVGVSRITARRALALLVEQGLIKRARGAGSF
ITPRVADPLSRLVGFTAKMQQRGFVPDSVWLSRTLRAASRDELTHLGLAPGATVARLERLRRADGIVMAIEHSTLPAAVV
PDPQALGASLYEYLDTRGMTVVRALQHFRAANATHAIAKWMAVKPGSALLVITRVGYGADQRAIEVTETYCRDDYYDFVA
ELKR

Sequences:

>Translated_244_residues
METGWSELAPDPLDDTPLYLQLARNLASAIHAGAWRAGEALPSERLLSGSVGVSRITARRALALLVEQGLIKRARGAGSF
ITPRVADPLSRLVGFTAKMQQRGFVPDSVWLSRTLRAASRDELTHLGLAPGATVARLERLRRADGIVMAIEHSTLPAAVV
PDPQALGASLYEYLDTRGMTVVRALQHFRAANATHAIAKWMAVKPGSALLVITRVGYGADQRAIEVTETYCRDDYYDFVA
ELKR
>Mature_244_residues
METGWSELAPDPLDDTPLYLQLARNLASAIHAGAWRAGEALPSERLLSGSVGVSRITARRALALLVEQGLIKRARGAGSF
ITPRVADPLSRLVGFTAKMQQRGFVPDSVWLSRTLRAASRDELTHLGLAPGATVARLERLRRADGIVMAIEHSTLPAAVV
PDPQALGASLYEYLDTRGMTVVRALQHFRAANATHAIAKWMAVKPGSALLVITRVGYGADQRAIEVTETYCRDDYYDFVA
ELKR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=32.8947368421053, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786950, Length=226, Percent_Identity=28.3185840707965, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87082252, Length=236, Percent_Identity=27.9661016949153, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790540, Length=212, Percent_Identity=28.3018867924528, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26558; Mature: 26558

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGWSELAPDPLDDTPLYLQLARNLASAIHAGAWRAGEALPSERLLSGSVGVSRITARR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHH
ALALLVEQGLIKRARGAGSFITPRVADPLSRLVGFTAKMQQRGFVPDSVWLSRTLRAASR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DELTHLGLAPGATVARLERLRRADGIVMAIEHSTLPAAVVPDPQALGASLYEYLDTRGMT
HHHHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCHH
VVRALQHFRAANATHAIAKWMAVKPGSALLVITRVGYGADQRAIEVTETYCRDDYYDFVA
HHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHH
ELKR
HHCC
>Mature Secondary Structure
METGWSELAPDPLDDTPLYLQLARNLASAIHAGAWRAGEALPSERLLSGSVGVSRITARR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHH
ALALLVEQGLIKRARGAGSFITPRVADPLSRLVGFTAKMQQRGFVPDSVWLSRTLRAASR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DELTHLGLAPGATVARLERLRRADGIVMAIEHSTLPAAVVPDPQALGASLYEYLDTRGMT
HHHHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCHH
VVRALQHFRAANATHAIAKWMAVKPGSALLVITRVGYGADQRAIEVTETYCRDDYYDFVA
HHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHH
ELKR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]