| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yijE [C]
Identifier: 116690727
GI number: 116690727
Start: 2997709
End: 2998644
Strand: Direct
Name: yijE [C]
Synonym: Bcen2424_2707
Alternate gene names: 116690727
Gene position: 2997709-2998644 (Clockwise)
Preceding gene: 116690725
Following gene: 116690732
Centisome position: 86.04
GC content: 71.9
Gene sequence:
>936_bases ATGACCGCGCTTGCCGCCGCCCCCGTGCGCCGCACCCTCGATACACGTGCCGTCGGCCTGATGTTGCTGCTGTGCGCGAT CTGGGGCTTCCAGCAGGTCGCGATCAAAAGCACGAACGCCGCGATCGCGCCGATGTTCCAGGCCGGGCTGCGCTCGGCGA TCGCCGCGCTGCTGCTATGGGGCTGGGCGCGCTCGCGCGGCACGCCGCTGTTTCAGGCGGACGGCACGTTCGGTGCGGGG CTCGCGGCCGGTGCGCTGTTCGCCGGCGAATTCATCTGCGTGTTCTTCGGGCTGACGCTGACGAGCGCGTCGCACATGGC GATCTTCCTGTACACGGCGCCGTGCTTCACCGCGCTCGGCCTGCACCTGTTCGCACCGGGCGAGCGGCTGCAGCGCGCGC AATGGGCCGGCGTCGGCCTTGCATTCGCCGGCATCGCGCTCGCGTTCGCGGACGGCTTCCTGAAGCCGCGCATGCCCGGC GCGTCCGTGCTGGCCGGGCTCGCCGGCGACGCGCTCGGCATCCTCGGCGGCGCGATGTGGGCCGCGACGACGGTCGTCGT GCGCTCGACGGCGCTCGCGCGGGCCAGCGCGAGCAAGACGCTGTTCTACCAGCTCGCGGTATCGGCGCTCGTTCTGGTCG CGCTCGCCGCGCTGTGCGGCCAGATGTCGTTCGCGCAGGTCACGCCGGTCGCGCTCGCGAGCCTCGCGTACCAGTCGGTG ATCGTCGCGTTCGTCAGCTACCTGTCGTGGTTCTGGCTGCTGACGCGCTACAGCGCGTCCCGGCTGTCCGTCTTCACGTT CCTGTCGCCGCTGTTCGGCGTCGCGTTCGGCGTGCTGCTGCTCGGCGAATCGGTCGGCTGGCGCTTCATGTCGGCGGCCG CGCTCGTGCTGACCGGCATCGCGCTCGTCAACGCGCCGCCGCGCCGGCGGGCGTGA
Upstream 100 bases:
>100_bases GTTGCCGCCACACTGCCGTGCGAAACCGCCGATTCGAGCGCGCCGGACGCGCCGCCCGCCTAACCTCGTTGCCGCCATGC CCGCCCCACGAGGCGCGCCG
Downstream 100 bases:
>100_bases CGGCCGGCGCAACACGCGCGGGCAATAAAAAAGGCTGCCGGTCGGGCAGCCCTCTTCGATACGGCCGGGGGTGGGCTCGC GCCACGCGCGTCCGTCATCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MTALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLWGWARSRGTPLFQADGTFGAG LAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALGLHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPG ASVLAGLAGDALGILGGAMWAATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGIALVNAPPRRRA
Sequences:
>Translated_311_residues MTALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLWGWARSRGTPLFQADGTFGAG LAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALGLHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPG ASVLAGLAGDALGILGGAMWAATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGIALVNAPPRRRA >Mature_310_residues TALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLWGWARSRGTPLFQADGTFGAGL AAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALGLHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPGA SVLAGLAGDALGILGGAMWAATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSVI VAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGIALVNAPPRRRA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32464; Mature: 32333
Theoretical pI: Translated: 11.30; Mature: 11.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLW CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH GWARSRGTPLFQADGTFGAGLAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALG HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH LHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPGASVLAGLAGDALGILGGAMW HHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ALVNAPPRRRA HHHCCCCCCCC >Mature Secondary Structure TALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLW CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH GWARSRGTPLFQADGTFGAGLAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALG HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH LHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPGASVLAGLAGDALGILGGAMW HHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ALVNAPPRRRA HHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]