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The map label for this gene is yhjC [C]

Identifier: 116690681

GI number: 116690681

Start: 2948079

End: 2948966

Strand: Direct

Name: yhjC [C]

Synonym: Bcen2424_2661

Alternate gene names: 116690681

Gene position: 2948079-2948966 (Clockwise)

Preceding gene: 116690679

Following gene: 116690682

Centisome position: 84.62

GC content: 64.3

Gene sequence:

>888_bases
ATGGATGAACTCCTACCGATGCGACTATTCGTCAAGGTCGCCGAACTTCGCAGTTTCGCGCGCGCCGCCACGGAACTGAA
CATCTCCAACTCGTCGGCCACCCGCCTCGTCATGAGCATCGAGGACCGGCTCGGCGCACGCCTGCTGAATCGCACCACCC
GCAGCCTGTCGCTGACCGACGCAGGCCACCTCTATCTGGCGCAGATACGTCACGTGATCGACGAAATCGACCGGGTGGAG
GACACGATCGCCTCGATGCACCACGAACCGATCGGATCGCTGAAAATCGCCGCGCCGGTCATGTTCGGGATGCACGTGCT
CGCGCCGGCCATCGATGCGTTCAAGATGCGCCACCCGGCCATCGTGCCGGAAGTCACGATCGTGGACCGTCACGTCGATC
TCGTGTCGGAGGGCTTCGACGTCGGGCTGCTGCTGTCCCAGCACATCAGCAACAACACGCTGGTGAAGCGCCCGCTCACG
CGGCTTAGGCAGCTCGTCTGCGCCGCACCGCAATATGCCGAGCGGCACGGCACGCCCGCGCATCCGCAGGATCTCGCGTC
GCACGCCTGCCTGGCGTTCCATGCCGATTTCATGGGCGAATACCTGTCGTTCGATCACGACCAGACGCGCATCACCGTAC
GCCCGAACAAGTCCGCGTCGTCGAACAACGTCGGGCTGATCCGGAACTGGGCGCTGTCCGGCATGGGCATCGCGGTCCTG
CCCGACTTCCTCGTCAAGTCGGATCTCGACGACGGCCGGCTGCTCGCGCTGCTGCCCGGCTATCGGCTCGAGGCCCTCGA
GATGAACGTCGCGTACCCGAGCCGCCGGCACTTTCCGCGCAAGGCCCGACTTTTCGTCGATCACCTGATCGACCATTTCG
TCAGTTGA

Upstream 100 bases:

>100_bases
ATACGCGGCTCCACAATAAACATTCATGAAAACAGGCCGTTAAAATCAAGCAAGCCGATAGATAGAATTCAATCAACGCT
TTCTGTTTATCGATAAAAAA

Downstream 100 bases:

>100_bases
ATGCAGGACGGCATCGCGCACGATTTTTCACGCCGATTCGCGGTCGCCCGCTCGAGCCGCACTCGCCCCGCACCCGGCCG
CGGCGGCGCGCCGGCAGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDELLPMRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYLAQIRHVIDEIDRVE
DTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLT
RLRQLVCAAPQYAERHGTPAHPQDLASHACLAFHADFMGEYLSFDHDQTRITVRPNKSASSNNVGLIRNWALSGMGIAVL
PDFLVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLIDHFVS

Sequences:

>Translated_295_residues
MDELLPMRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYLAQIRHVIDEIDRVE
DTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLT
RLRQLVCAAPQYAERHGTPAHPQDLASHACLAFHADFMGEYLSFDHDQTRITVRPNKSASSNNVGLIRNWALSGMGIAVL
PDFLVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLIDHFVS
>Mature_295_residues
MDELLPMRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYLAQIRHVIDEIDRVE
DTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLT
RLRQLVCAAPQYAERHGTPAHPQDLASHACLAFHADFMGEYLSFDHDQTRITVRPNKSASSNNVGLIRNWALSGMGIAVL
PDFLVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLIDHFVS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=33.5616438356164, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=30.4054054054054, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=31.1188811188811, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787128, Length=280, Percent_Identity=32.1428571428571, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=29.3103448275862, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=28.4722222222222, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789440, Length=256, Percent_Identity=26.5625, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=25.9541984732824, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790011, Length=302, Percent_Identity=22.5165562913907, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=306, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790783, Length=255, Percent_Identity=24.7058823529412, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI157672245, Length=113, Percent_Identity=30.9734513274336, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788706, Length=179, Percent_Identity=25.6983240223464, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI145693105, Length=162, Percent_Identity=30.2469135802469, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788748, Length=139, Percent_Identity=30.2158273381295, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32969; Mature: 32969

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELLPMRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECC
AGHLYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
IVPEVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYAERHGTPA
CCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCC
HPQDLASHACLAFHADFMGEYLSFDHDQTRITVRPNKSASSNNVGLIRNWALSGMGIAVL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEHHHCCCCHHHH
PDFLVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLIDHFVS
HHHHHHCCCCCCEEEEECCCCEEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDELLPMRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECC
AGHLYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
IVPEVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYAERHGTPA
CCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCC
HPQDLASHACLAFHADFMGEYLSFDHDQTRITVRPNKSASSNNVGLIRNWALSGMGIAVL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEHHHCCCCHHHH
PDFLVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLIDHFVS
HHHHHHCCCCCCEEEEECCCCEEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]