| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690650
Identifier: 116690650
GI number: 116690650
Start: 2914091
End: 2914909
Strand: Reverse
Name: 116690650
Synonym: Bcen2424_2630
Alternate gene names: NA
Gene position: 2914909-2914091 (Counterclockwise)
Preceding gene: 116690657
Following gene: 116690649
Centisome position: 83.67
GC content: 68.74
Gene sequence:
>819_bases ATGGGTCGCACCGGCAGGAGGCGCCGGCGTCCCGACGAACCGCCCGCTGCGGCCCGCTTTCCGATGCTCGCTCGATTGTC CGCCACCGACCGCTTCGCGCTGATCCAGGGCGCACGCGACTATTCCCCGACACTGATGGCGATCCTGTCCTGGGGGCTCG TCACCGGCATCGCGATGAGCAAGTCCGTGATGACGCTCGGGCAGGCGAGCGCGATGTCGCTGTTCGTCTACGCGGGCTCG TCGCAGCTCGCGGTGCTGCCGCTCCTCGCGGCGAAGCTGCCGATCTGGACCGTGCTGCTCACGGCCGCGATGGTCAACAT GCGCTTCGTGATCTTCAGCGCCGGGCTGGCGCCCCATTTTTCCTACCTGCCGCTGTGGCGGCGCCTCGCGATCGGCTATT TCAACGGCGACGTGATCTACCTGCTGTTCCAGAAACAGGGCTTCGCGTACGGCCGCGTGCCGGGCAAGGAAGCGTATTTC TGGGGGATGGCGCTCGCGAGCTGGGCGTCGTGGCAGGTGTCCTCGCTCGCCGGCATCCTGCTCGCGAGCGTCTTTCCGGC GAGCTGGGGGCTGGAGCTGGCCGGCACGCTCGCGCTGATCCCGATCATGGTGTCGGCGGTCGCGAACCGCTCGACGCTCG CGGCCGTCGCGGTCGCCGGGATCGTGTCGCTCGTCGCGTTCGACCTGCCGTACCGGCTCGCGCTGCCGATCGCGGTGCTC GCCGCGCTCGCGGCCGGCTGCACAGCCGATTTCTTCGTCGAGCGGGCCGACTGGCGGCGCATCCGTACCGAAACCGTGCA CGAAAAGGACATGGAATGA
Upstream 100 bases:
>100_bases GTTGAGCCGGAAAGACGCTTATTTTAGCGTCATTTGGGGGCGATCCGGTCGGCCGGCGCGGGGCCGGCGCTATAATCGTC CGGTACCGATTCCAATAACG
Downstream 100 bases:
>100_bases GCGCGACCGAGATCTGGATCGTCATCGTCGGGATGACGATCGTCACGGCCGTCACGCGCGCGCTGTTCCTGATCGGCGGC GAGCGCACGGTCTTGCCCGA
Product: AzlC family protein
Products: NA
Alternate protein names: Branched-Chain Amino Acid Transport Protein AzlC; Branched-Chain Amino Acid Permease; AzlC-Like; AzlC-Like Protein; Inner Membrane Protein; Branched Chain Amino Acid Efflux Pump LivE; Inner Membrane Protein YgaZ; AzlC Family; AzlC Protein; Azlc Family Protein; Branched Chain Amino Acid ABC Transporter
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MGRTGRRRRRPDEPPAAARFPMLARLSATDRFALIQGARDYSPTLMAILSWGLVTGIAMSKSVMTLGQASAMSLFVYAGS SQLAVLPLLAAKLPIWTVLLTAAMVNMRFVIFSAGLAPHFSYLPLWRRLAIGYFNGDVIYLLFQKQGFAYGRVPGKEAYF WGMALASWASWQVSSLAGILLASVFPASWGLELAGTLALIPIMVSAVANRSTLAAVAVAGIVSLVAFDLPYRLALPIAVL AALAAGCTADFFVERADWRRIRTETVHEKDME
Sequences:
>Translated_272_residues MGRTGRRRRRPDEPPAAARFPMLARLSATDRFALIQGARDYSPTLMAILSWGLVTGIAMSKSVMTLGQASAMSLFVYAGS SQLAVLPLLAAKLPIWTVLLTAAMVNMRFVIFSAGLAPHFSYLPLWRRLAIGYFNGDVIYLLFQKQGFAYGRVPGKEAYF WGMALASWASWQVSSLAGILLASVFPASWGLELAGTLALIPIMVSAVANRSTLAAVAVAGIVSLVAFDLPYRLALPIAVL AALAAGCTADFFVERADWRRIRTETVHEKDME >Mature_271_residues GRTGRRRRRPDEPPAAARFPMLARLSATDRFALIQGARDYSPTLMAILSWGLVTGIAMSKSVMTLGQASAMSLFVYAGSS QLAVLPLLAAKLPIWTVLLTAAMVNMRFVIFSAGLAPHFSYLPLWRRLAIGYFNGDVIYLLFQKQGFAYGRVPGKEAYFW GMALASWASWQVSSLAGILLASVFPASWGLELAGTLALIPIMVSAVANRSTLAAVAVAGIVSLVAFDLPYRLALPIAVLA ALAAGCTADFFVERADWRRIRTETVHEKDME
Specific function: Unknown
COG id: COG1296
COG function: function code E; Predicted branched-chain amino acid permease (azaleucine resistance)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29519; Mature: 29388
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRTGRRRRRPDEPPAAARFPMLARLSATDRFALIQGARDYSPTLMAILSWGLVTGIAMS CCCCCCCCCCCCCCCCHHCCCHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHH KSVMTLGQASAMSLFVYAGSSQLAVLPLLAAKLPIWTVLLTAAMVNMRFVIFSAGLAPHF HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCH SYLPLWRRLAIGYFNGDVIYLLFQKQGFAYGRVPGKEAYFWGMALASWASWQVSSLAGIL HHHHHHHHHHHHEECCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LASVFPASWGLELAGTLALIPIMVSAVANRSTLAAVAVAGIVSLVAFDLPYRLALPIAVL HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AALAAGCTADFFVERADWRRIRTETVHEKDME HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GRTGRRRRRPDEPPAAARFPMLARLSATDRFALIQGARDYSPTLMAILSWGLVTGIAMS CCCCCCCCCCCCCCCHHCCCHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHH KSVMTLGQASAMSLFVYAGSSQLAVLPLLAAKLPIWTVLLTAAMVNMRFVIFSAGLAPHF HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCH SYLPLWRRLAIGYFNGDVIYLLFQKQGFAYGRVPGKEAYFWGMALASWASWQVSSLAGIL HHHHHHHHHHHHEECCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LASVFPASWGLELAGTLALIPIMVSAVANRSTLAAVAVAGIVSLVAFDLPYRLALPIAVL HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AALAAGCTADFFVERADWRRIRTETVHEKDME HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA