| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is pcaK [H]
Identifier: 116690600
GI number: 116690600
Start: 2854567
End: 2855970
Strand: Reverse
Name: pcaK [H]
Synonym: Bcen2424_2580
Alternate gene names: 116690600
Gene position: 2855970-2854567 (Counterclockwise)
Preceding gene: 116690601
Following gene: 116690596
Centisome position: 81.98
GC content: 72.22
Gene sequence:
>1404_bases ATGAGCACGCCCGACGCACTGAATGAACGGCCGTCGTCGATCGACATCGGCACGACGCTCGACGACGGCCCGTTCACGCT GATGCAGCGCTGCGTGGTGCTGCTCGCCGCGCTCGCGATCGTGCTCGACGGCTTTGACGGCCAGTTGATCGGTTTCGCGA TTCCGGTGCTGATCCGCGAGTGGGGCATCACGCGCGGTGCGTTCGCGCCGGCCGTCGCGGCGGGACTGGTCGGGATGGGT ATCGGCAGCGCCTGCGCGGGGATCGTTGCGGACCGCTACGGCCGCCGCCAGGCCGTGATCGGCAGCGTGTTCCTGTTCGG CATCGCGACCTGCGCGATCGGGTTCGCGCCCGACGTCGCGACGATCGCGATGCTGCGTTTTTGCGCGGGGCTCGGGATCG GCGGCGCGCTGCCGACGGCCACGACGATGACCGCCGAATACACGCCCGCGCGGCGCCGCACGATGATGGTGACCGCGACG ATCGTCTGCGTGCCGCTCGGCGGGATGCTGGCCGGCCTGTTCGCGCACGAGGTGCTGCCGCGCTACGGCTGGCGCGGGCT GTTCTTCGCGGGCGGCGCGTTGCCGCTCGTGCTCGGCTTCGTGCTGGTGCGCGCGTTGCCCGAATCGCCGCGCTATCTCG CGCGGCGCCCCGCACGCTGGCCGGAACTCGGCGCGCTGCTCGCGCGGATGCAGCGGCCGGTCGCACCGGGCACCGTGTTC ACCGATACGAAGGACGCCCGTGCGCCGGGCAGCCGCGGCGGCTTCGGCGCGCTGTTCGCGAGCGGCCAGGCGCGCGACAC GATCGCGCTGTGGTGCGCGTTCTTCATGTGCCTGCTCGCCGTGTACGCGGCGTTCAGCTGGTTGCCGACGATGCTCGCGG CGAGCGGGTTGAGCGTGTCGGTCGCGGGCTCGGGCCTCACCGCGTACAACCTCGGCGGCGTGATCGGTGCGCTGCTGTGC GCATGGGCGATCGCGCATGCGGGGTCACGCTGGCCGCTCGCGCTGTGCAGCATCGGCGGCGCGGCGAGCGCGGTATGGCT GATGGGCGTCGATGCCAGCCGCCATACCGGCTGGCTGATCGTCGGGCTCGGTCTGCACGGGTTGTTCGTCAACGCGGTGC AGTCGACGATGTATGCGCTGTGCGCGTACATCTATCCGACGGCCGTGCGCGCGACGGGCACCGCGAGTGCGCTCGCGTTC GGTCGGCTCGGCGCGATCCTCAGCGCGTTCGCGGGCGCGATCGTGATCACGGCGGGCGGCGCGGGTGCGTACCTGACGAT GCTGGCCGTCGCGATGGGGGTGGTGTGCATCGCGCTGCTCGCGATGCGGCGGCACATTCCGCGGCTGTCGCGCGCGGCGG CGCAGCCGCGCGAAGGGGAGGCGCTCGCCCGCACGTCGTCGTGA
Upstream 100 bases:
>100_bases CCCGGACAACCGGAGACGCCATGAAAACCATTGAATGCCGTTGTCTTGTCGCGCACCGTTCGCGCATCTTGCCGCCGCCG CGCGGTGCATCGGAGGCCGC
Downstream 100 bases:
>100_bases TCGTCGTGACGGCGGGCGCGTGGCGTGCGTTACAGCGTGGTGCGCACGTGCCAGAGCTCGGGGAATAGCACGACGTCGAG CATCTTGCGCAGGTACGGCG
Product: major facilitator transporter
Products: Proton [Cytoplasm]; 3-(3-hydroxyphenyl)propionate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MSTPDALNERPSSIDIGTTLDDGPFTLMQRCVVLLAALAIVLDGFDGQLIGFAIPVLIREWGITRGAFAPAVAAGLVGMG IGSACAGIVADRYGRRQAVIGSVFLFGIATCAIGFAPDVATIAMLRFCAGLGIGGALPTATTMTAEYTPARRRTMMVTAT IVCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLARMQRPVAPGTVF TDTKDARAPGSRGGFGALFASGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVSVAGSGLTAYNLGGVIGALLC AWAIAHAGSRWPLALCSIGGAASAVWLMGVDASRHTGWLIVGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAF GRLGAILSAFAGAIVITAGGAGAYLTMLAVAMGVVCIALLAMRRHIPRLSRAAAQPREGEALARTSS
Sequences:
>Translated_467_residues MSTPDALNERPSSIDIGTTLDDGPFTLMQRCVVLLAALAIVLDGFDGQLIGFAIPVLIREWGITRGAFAPAVAAGLVGMG IGSACAGIVADRYGRRQAVIGSVFLFGIATCAIGFAPDVATIAMLRFCAGLGIGGALPTATTMTAEYTPARRRTMMVTAT IVCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLARMQRPVAPGTVF TDTKDARAPGSRGGFGALFASGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVSVAGSGLTAYNLGGVIGALLC AWAIAHAGSRWPLALCSIGGAASAVWLMGVDASRHTGWLIVGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAF GRLGAILSAFAGAIVITAGGAGAYLTMLAVAMGVVCIALLAMRRHIPRLSRAAAQPREGEALARTSS >Mature_466_residues STPDALNERPSSIDIGTTLDDGPFTLMQRCVVLLAALAIVLDGFDGQLIGFAIPVLIREWGITRGAFAPAVAAGLVGMGI GSACAGIVADRYGRRQAVIGSVFLFGIATCAIGFAPDVATIAMLRFCAGLGIGGALPTATTMTAEYTPARRRTMMVTATI VCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLARMQRPVAPGTVFT DTKDARAPGSRGGFGALFASGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVSVAGSGLTAYNLGGVIGALLCA WAIAHAGSRWPLALCSIGGAASAVWLMGVDASRHTGWLIVGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAFG RLGAILSAFAGAIVITAGGAGAYLTMLAVAMGVVCIALLAMRRHIPRLSRAAAQPREGEALARTSS
Specific function: Could Be A Transporter For 3-Phenylpropionate (Hydrocinnamic Acid). [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI24308167, Length=443, Percent_Identity=25.5079006772009, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI166064021, Length=426, Percent_Identity=26.056338028169, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI213021148, Length=487, Percent_Identity=23.6139630390144, Blast_Score=76, Evalue=5e-14, Organism=Escherichia coli, GI87081723, Length=334, Percent_Identity=32.0359281437126, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI87082231, Length=186, Percent_Identity=31.7204301075269, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1786229, Length=453, Percent_Identity=23.841059602649, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1788068, Length=441, Percent_Identity=22.6757369614512, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082404, Length=205, Percent_Identity=25.8536585365854, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87082159, Length=393, Percent_Identity=27.4809160305344, Blast_Score=82, Evalue=9e-17, Organism=Escherichia coli, GI1788074, Length=380, Percent_Identity=23.9473684210526, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1789152, Length=407, Percent_Identity=23.3415233415233, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1790463, Length=257, Percent_Identity=26.4591439688716, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI32564663, Length=431, Percent_Identity=25.5220417633411, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI19922874, Length=426, Percent_Identity=24.1784037558685, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI19922616, Length=365, Percent_Identity=23.2876712328767, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004746 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 48199; Mature: 48068
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPDALNERPSSIDIGTTLDDGPFTLMQRCVVLLAALAIVLDGFDGQLIGFAIPVLIRE CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH WGITRGAFAPAVAAGLVGMGIGSACAGIVADRYGRRQAVIGSVFLFGIATCAIGFAPDVA HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH TIAMLRFCAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPLGGMLAGLFAHEVLP HHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHH RYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLARMQRPVAPGTVF HCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCEE TDTKDARAPGSRGGFGALFASGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVS ECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE VAGSGLTAYNLGGVIGALLCAWAIAHAGSRWPLALCSIGGAASAVWLMGVDASRHTGWLI ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHEEEEEECCCCCCCCEEE VGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAFGRLGAILSAFAGAIVITAGG EECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCC AGAYLTMLAVAMGVVCIALLAMRRHIPRLSRAAAQPREGEALARTSS HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure STPDALNERPSSIDIGTTLDDGPFTLMQRCVVLLAALAIVLDGFDGQLIGFAIPVLIRE CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH WGITRGAFAPAVAAGLVGMGIGSACAGIVADRYGRRQAVIGSVFLFGIATCAIGFAPDVA HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH TIAMLRFCAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPLGGMLAGLFAHEVLP HHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHH RYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLARMQRPVAPGTVF HCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCEE TDTKDARAPGSRGGFGALFASGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVS ECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE VAGSGLTAYNLGGVIGALLCAWAIAHAGSRWPLALCSIGGAASAVWLMGVDASRHTGWLI ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHEEEEEECCCCCCCCEEE VGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAFGRLGAILSAFAGAIVITAGG EECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCC AGAYLTMLAVAMGVVCIALLAMRRHIPRLSRAAAQPREGEALARTSS HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; 3-(3-hydroxyphenyl)propionate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + 3-(3-hydroxyphenyl)propionate [Periplasm] = Proton [Cytoplasm] + 3-(3-hydroxyphenyl)propionate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063101 [H]