| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690590
Identifier: 116690590
GI number: 116690590
Start: 2845650
End: 2846951
Strand: Direct
Name: 116690590
Synonym: Bcen2424_2570
Alternate gene names: NA
Gene position: 2845650-2846951 (Clockwise)
Preceding gene: 116690589
Following gene: 116690593
Centisome position: 81.68
GC content: 71.81
Gene sequence:
>1302_bases ATGGGTGACGGCAGGACGCGGCGCAAGGCGCCGCCGCAACGACAGCAGCGCGACGACACCGACGAGTCGCACGCCGACGG GCAATTCGACCTGTTCGGCATGCCGACGGATGCCGCACGCGCATCGCCAGCGGACGACGAGCAACCCGCCAGCCCCGATG AGCACGTGACGCCGGACACGCCGGAAGACGCACGACCGGCACCACCGCCCGCCCGTACGACCTCCCGACCCGCCGACGAC GACGAACCTGTCCCGTCGTCCGGCCTGCTGTGGGACGAACCGTCCCCGCCGGTCGCCGCGCCGAAGAAAGGCCGCCGCAA ACGCGGCGTGCTTCCCGCGCCGATCTCGGCGGACGTCGCCGCCGCTGCGGCCGGCCTGCCGCCGAACGTACGGCTCGGCA CGTCGTCGTGGTACTTCCCCGGCTGGAACGGCATCGTCTACGACGGCGATTTCGCGCAGACGAAGCTGTCGCGCGAAGGG CTCGAAGCGTACGGCGCGCATCCGCTGCTGAGGAGCGTGAGCCTCGACCGGTCGTTCTACGGCCCGCTGTCGGTGGCCGA CTACCTGCGCTATGCGCAACAGGTGCCCGACGATTTCCGCTTCGTCGTGAAGGCGCCGGCCGCGGTGACCGACGCGGTGA TCCGCGGCCGGCGCGGCGAGCCGTCCGGGCCGAACCCGACTTTCCTCGATGCCCAGCTCGCGACCCGCGAATTCGTCCAG CCGTGCCTCGACGGGCTCGGCCGCAAAGCCGGCGTGCTGGTGTTCCAGTTCTCGCCGCTGCCCGACCAACTGCTCGCTGA ACCGGCCGCGCTGATCGACCGGCTCACCGCGTTCTTCGCGGCGCTGCCGTCGCTGCCGCCGGATGCCGACGGCACGCGCT ACGCGATCGAGATCCGCGACGCGAGCCTGCTCACGCCGCGCTTCATCCGCGCGCTGGCCGCGCTCGGTGTGCGCTACTGC GTCGGCCTGCACGCGCGGATGCCCGACCCGCTGCGCCAGGCCGCCGCGCTCGCGCTGCTCGACGGCGACGCGCCGGGCCC GCTGATCGTACGCTGGAGCCTGCACGGCGGTTTCAAGTACGAGCAGGCGAAGGCGAAATACGAGCCGTTCGACAAGCTCG TCGACGAAGACCCAGCCACCCGCTCGGCGCTCGCCGAACTGGCCGCGCGCTACGCGCTGGCCGGGCAGCCGGTGATCATC ACGATCAACAACAAGGCGGAAGGCTCCGCGCCGCTGTCGTGCATCGCGCTCGCACGCGAAATCGCCGCCGCGTGCGCACA GTGGCGCAACGAGGCGGCGTGA
Upstream 100 bases:
>100_bases GCCGCAAGGCCGGACGCAGCGCGAAAACGCTGCCGTGGTCGCGGCGCTACATGTACGAACACGCGCTGCCGCGCTAGGCG GCGCATCACGCTGGGCATGC
Downstream 100 bases:
>100_bases CCGCGGTTTCCGCCGCCGCCGACGCTTACGCGCCGCGCAGCGACTTCAGCCGGTGCGAGAACTTCTGCCGGAATTTCGCG AGCTTCGGCCCGATCACGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MGDGRTRRKAPPQRQQRDDTDESHADGQFDLFGMPTDAARASPADDEQPASPDEHVTPDTPEDARPAPPPARTTSRPADD DEPVPSSGLLWDEPSPPVAAPKKGRRKRGVLPAPISADVAAAAAGLPPNVRLGTSSWYFPGWNGIVYDGDFAQTKLSREG LEAYGAHPLLRSVSLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPAAVTDAVIRGRRGEPSGPNPTFLDAQLATREFVQ PCLDGLGRKAGVLVFQFSPLPDQLLAEPAALIDRLTAFFAALPSLPPDADGTRYAIEIRDASLLTPRFIRALAALGVRYC VGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVII TINNKAEGSAPLSCIALAREIAAACAQWRNEAA
Sequences:
>Translated_433_residues MGDGRTRRKAPPQRQQRDDTDESHADGQFDLFGMPTDAARASPADDEQPASPDEHVTPDTPEDARPAPPPARTTSRPADD DEPVPSSGLLWDEPSPPVAAPKKGRRKRGVLPAPISADVAAAAAGLPPNVRLGTSSWYFPGWNGIVYDGDFAQTKLSREG LEAYGAHPLLRSVSLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPAAVTDAVIRGRRGEPSGPNPTFLDAQLATREFVQ PCLDGLGRKAGVLVFQFSPLPDQLLAEPAALIDRLTAFFAALPSLPPDADGTRYAIEIRDASLLTPRFIRALAALGVRYC VGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVII TINNKAEGSAPLSCIALAREIAAACAQWRNEAA >Mature_432_residues GDGRTRRKAPPQRQQRDDTDESHADGQFDLFGMPTDAARASPADDEQPASPDEHVTPDTPEDARPAPPPARTTSRPADDD EPVPSSGLLWDEPSPPVAAPKKGRRKRGVLPAPISADVAAAAAGLPPNVRLGTSSWYFPGWNGIVYDGDFAQTKLSREGL EAYGAHPLLRSVSLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPAAVTDAVIRGRRGEPSGPNPTFLDAQLATREFVQP CLDGLGRKAGVLVFQFSPLPDQLLAEPAALIDRLTAFFAALPSLPPDADGTRYAIEIRDASLLTPRFIRALAALGVRYCV GLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVIIT INNKAEGSAPLSCIALAREIAAACAQWRNEAA
Specific function: Unknown
COG id: COG1801
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46505; Mature: 46373
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDGRTRRKAPPQRQQRDDTDESHADGQFDLFGMPTDAARASPADDEQPASPDEHVTPDT CCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCC PEDARPAPPPARTTSRPADDDEPVPSSGLLWDEPSPPVAAPKKGRRKRGVLPAPISADVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHH AAAAGLPPNVRLGTSSWYFPGWNGIVYDGDFAQTKLSREGLEAYGAHPLLRSVSLDRSFY HHHCCCCCCCEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHC GPLSVADYLRYAQQVPDDFRFVVKAPAAVTDAVIRGRRGEPSGPNPTFLDAQLATREFVQ CCHHHHHHHHHHHHCCHHHEEEHCCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHH PCLDGLGRKAGVLVFQFSPLPDQLLAEPAALIDRLTAFFAALPSLPPDADGTRYAIEIRD HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC ASLLTPRFIRALAALGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKY CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCEEEEEECCCCCEE EQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVIITINNKAEGSAPLSCIALARE HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH IAAACAQWRNEAA HHHHHHHHHHCCC >Mature Secondary Structure GDGRTRRKAPPQRQQRDDTDESHADGQFDLFGMPTDAARASPADDEQPASPDEHVTPDT CCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCC PEDARPAPPPARTTSRPADDDEPVPSSGLLWDEPSPPVAAPKKGRRKRGVLPAPISADVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHH AAAAGLPPNVRLGTSSWYFPGWNGIVYDGDFAQTKLSREGLEAYGAHPLLRSVSLDRSFY HHHCCCCCCCEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHC GPLSVADYLRYAQQVPDDFRFVVKAPAAVTDAVIRGRRGEPSGPNPTFLDAQLATREFVQ CCHHHHHHHHHHHHCCHHHEEEHCCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHH PCLDGLGRKAGVLVFQFSPLPDQLLAEPAALIDRLTAFFAALPSLPPDADGTRYAIEIRD HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC ASLLTPRFIRALAALGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKY CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCEEEEEECCCCCEE EQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVIITINNKAEGSAPLSCIALARE HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH IAAACAQWRNEAA HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA