| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690448
Identifier: 116690448
GI number: 116690448
Start: 2695761
End: 2696570
Strand: Direct
Name: 116690448
Synonym: Bcen2424_2428
Alternate gene names: NA
Gene position: 2695761-2696570 (Clockwise)
Preceding gene: 116690446
Following gene: 116690449
Centisome position: 77.38
GC content: 73.95
Gene sequence:
>810_bases ATGAACCAGCCGTCCTCCGCCCCCGTCCCGCCGCTCGACGCCACGCCCGCCCGCGCGCTCGGCGAATTCATCCGCGCCCA CCGCGAGCGGCTGTCGCCGCAGGCGGTCGGCCTGCCGCCCGGCCCGCGCCGCCGCACGCCGGGGCTGCGGCGCGAGGAAG TCGCGCAACTGTGCGGCGTGAGCCCGACCTGGTACACGTGGATCGAACAGGGCCGGCCCGTGTCGGCCTCCGCCGACGCG CTCGCCCGGATCGCCGTCGCGCTACAGCTGTCGAAGGCCGAGCGCGCGTACCTGTTCGAGCTGGCCGCGCAGCGCGACCC GGCCGAGCCCGACGTCGCGGGCGGCGACCTGCCGCCGACGCTCGCCGCCACCGTCGCGGCCATCGCGACGCCCGCCTACG TGCTCGATCGCCAATGGAACGCGCTCGCGTGGAACGCGCCGGCCGCCGCGCTCTTTTCCGGCTGGCTCGACGACGAGCAC GACCGCAACCTGCTGCGCTTCACGTTCATGTCGCCGGCCGCACGCACGCTGATCGTCGACTGGGACACCCGCGCGCGGCG GCTCGCGGCCGAATTCCGCGCCGATGCGATCCGCCACCTGACCGACGCGCCGACGCGCGCGCTGATCGACGCGCTGACCA CCGGCAGCGACGCGTTCGCACAGTACTGGGCGTCGCAGGACGTGTTCGAGCGCGAAGGCGGCCTGCGCGAATTCGACCAT CCGGCCGATGGCCGTCTGGTGTACCAGCAGATCACGCTGAAGCCCACGCACCGCGAGGACCTGAAGCTCGTCGTGCTGGT GCGCGACTGA
Upstream 100 bases:
>100_bases GCTTGTACCAGTACAAGTTAAGTAGTTATTCTGGTATTCGATCCACCTGTCTGATCGTTCGATCGTTGCCGCGTTTTCGC TTCCACTTCGCCGTTTCCGC
Downstream 100 bases:
>100_bases GCGCGCCGGCCCCCGCGCCGGCGGCGGTCGGCCGGCCCGCGAATGTTAGAATCGCGGGATTCCCTCGGCGGCTCACGGCC GCCCAACTCCCCTTCGAAGA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator; Helix-Turn-Helix Domain Protein; XRE Family Transcription Regulator Protein; Helix-Turn-Helix Domain Containing Protein; Helix-Turn-Helix Protein; Transcriptional Regulator Protein
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MNQPSSAPVPPLDATPARALGEFIRAHRERLSPQAVGLPPGPRRRTPGLRREEVAQLCGVSPTWYTWIEQGRPVSASADA LARIAVALQLSKAERAYLFELAAQRDPAEPDVAGGDLPPTLAATVAAIATPAYVLDRQWNALAWNAPAAALFSGWLDDEH DRNLLRFTFMSPAARTLIVDWDTRARRLAAEFRADAIRHLTDAPTRALIDALTTGSDAFAQYWASQDVFEREGGLREFDH PADGRLVYQQITLKPTHREDLKLVVLVRD
Sequences:
>Translated_269_residues MNQPSSAPVPPLDATPARALGEFIRAHRERLSPQAVGLPPGPRRRTPGLRREEVAQLCGVSPTWYTWIEQGRPVSASADA LARIAVALQLSKAERAYLFELAAQRDPAEPDVAGGDLPPTLAATVAAIATPAYVLDRQWNALAWNAPAAALFSGWLDDEH DRNLLRFTFMSPAARTLIVDWDTRARRLAAEFRADAIRHLTDAPTRALIDALTTGSDAFAQYWASQDVFEREGGLREFDH PADGRLVYQQITLKPTHREDLKLVVLVRD >Mature_269_residues MNQPSSAPVPPLDATPARALGEFIRAHRERLSPQAVGLPPGPRRRTPGLRREEVAQLCGVSPTWYTWIEQGRPVSASADA LARIAVALQLSKAERAYLFELAAQRDPAEPDVAGGDLPPTLAATVAAIATPAYVLDRQWNALAWNAPAAALFSGWLDDEH DRNLLRFTFMSPAARTLIVDWDTRARRLAAEFRADAIRHLTDAPTRALIDALTTGSDAFAQYWASQDVFEREGGLREFDH PADGRLVYQQITLKPTHREDLKLVVLVRD
Specific function: Unknown
COG id: COG1396
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29686; Mature: 29686
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPSSAPVPPLDATPARALGEFIRAHRERLSPQAVGLPPGPRRRTPGLRREEVAQLCGV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC SPTWYTWIEQGRPVSASADALARIAVALQLSKAERAYLFELAAQRDPAEPDVAGGDLPPT CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH LAATVAAIATPAYVLDRQWNALAWNAPAAALFSGWLDDEHDRNLLRFTFMSPAARTLIVD HHHHHHHHHCHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEE WDTRARRLAAEFRADAIRHLTDAPTRALIDALTTGSDAFAQYWASQDVFEREGGLREFDH CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCCCC PADGRLVYQQITLKPTHREDLKLVVLVRD CCCCEEEEEEEEECCCCCCCCEEEEEEEC >Mature Secondary Structure MNQPSSAPVPPLDATPARALGEFIRAHRERLSPQAVGLPPGPRRRTPGLRREEVAQLCGV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC SPTWYTWIEQGRPVSASADALARIAVALQLSKAERAYLFELAAQRDPAEPDVAGGDLPPT CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH LAATVAAIATPAYVLDRQWNALAWNAPAAALFSGWLDDEHDRNLLRFTFMSPAARTLIVD HHHHHHHHHCHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEE WDTRARRLAAEFRADAIRHLTDAPTRALIDALTTGSDAFAQYWASQDVFEREGGLREFDH CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCCCC PADGRLVYQQITLKPTHREDLKLVVLVRD CCCCEEEEEEEEECCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA