| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690418
Identifier: 116690418
GI number: 116690418
Start: 2659461
End: 2661218
Strand: Reverse
Name: 116690418
Synonym: Bcen2424_2398
Alternate gene names: NA
Gene position: 2661218-2659461 (Counterclockwise)
Preceding gene: 116690420
Following gene: 116690417
Centisome position: 76.39
GC content: 65.93
Gene sequence:
>1758_bases ATGAACGTCGGATTCTTCAATCCGAACCGGACCGCCAACGCATCCGCGTGGCGCGTGTTGCCGAACCGGTGGGACTTCAT CGCATTTCCGCTGATCATCTGCCTGATCGCGATGGCGGTGGTCGGCTTTCACGAAACGATGGCGCCGATCGGCGTGCTGC AGACGCAGAAGATCTCGCTCGATCCGTCGAACCTGCCCGAATACGCGCTGCGCACCACGCTGCGGATGCTCGCCGCGATG GTCGCGTCGCTGGCGTTCACGCTCGTCTACGGCACGCTCGCGGCCAAGAGCCGCCGCGCGGGCATGGTGCTGATCCCGAT CCTCGACATCCTGCAGTCGGTGCCGGTGCTCGGCTTCATCTCGTTTACGGTCACGTTCTTCCTCGCGCTGTTCCCGAGCC GCGTGCTCGGCGCCGAGCTGGCCGCGATCTTCGCGATCTTCACGAGCCAGGCGTGGAACATGACGTTCAGCTTCTACCAG TCGCTGCGCACGGTGCCGCGCGACCTGGACGAAGTGTCGCGCGGCTTCCACCTGACGTCCTGGCAGCGCTTCTGGAAGCT CGAAGTGCCGTTCTCGATGCCGGGCCTGATCTGGAACATGATGATGTCGATGTCGGGCGGCTGGTTCTTCGTCGTCGCGT CGGAGGCGATCACCGTCGGCAACCAGACGATCACGCTGCCGGGCATCGGCGCGTATCTCGCGCAGGCGATCTCCGACAAG AACTTCGGCGCGATCGGCTGGGTGATCCTGACGATGACGGTCGTGATCCTCGCGTATGACCAGCTCCTGTTCCGCCCGCT CATCGCGTGGGCCGACAAGTTCCGGATGGAGAACACCGCGTCGGGCGATGCGCCGCAATCGTGGCTGCTCGACCTCGTGC GCCGCACGCGGCTGATCCATCAGTTGCTCGTGCCGGCCGGCTGGTTCTTCGCGAAGGCCGCTCGGATTCCGCTGCGCCTG CCGCTGTCGGGCGCGATGCGTTTCACGCTGCCGAAAGTCGAGAAGAAGGCGTCGCGCACGGTCGACATCGCGTGGGCCGG GCTCGTGCTGATCGGCACGGCCTATATCGTGTGGCGCGTCGTCAGCTTCGTCGCGACCGGCGTGACGATGGCCGAGGTCG GCCACGTACTCGTGCTCGGGCTCATCACGCTGCTGCGCGTGGTCGTGCTGATCTCGATCGCGTCGGTGATCTGGGTGCCG ATCGGCGTGTGGGTCGGGCTGCGCCCGAAGCTGGCCGAGAAGCTGCAGCCGCTCGCGCAGTTCCTCGCCGCGTTCCCGGC GAACCTGCTGTTCCCGGTGTTCGTGATCGTGATCGCGCGCTTCCACCTGAACGCGGACATCTGGCTGTCGCCGCTGATCG TGCTCGGCACGCAGTGGTATATCCTGTTCAACGTGATCGCCGGCGCGACGTCCTACCCGAACGACTATCGCGAAGCGGCG ACCAACTTCCGTATCCGCGGCTGGCAGTGGTGGCGCCAGGCGATCCTGCCCGGCATCTTCCCGTACTACGTGACGGGCGC GATCACCGCATCGGGCGGCGCGTGGAACGCGAGCATCGTGTCGGAAGCCGTGCAGTGGGGCAGCACCCGAATCGAGGCGC ACGGCCTCGGCGCCTACATCGCGCAGACCACCGCCGCCGGCGATTTTCCGAAGATCATCCTGGGCATCGCCGTGATGTCC CTGTTCGTCACCCTGTTCAACCGCCTGCTGTGGCGCCCGCTGTATGCCTTCGCCGAAGCGAAGCTGCGGCTCGACTGA
Upstream 100 bases:
>100_bases GCGCGGCATCGCCAGTCAATCGAATTACCGCGCCCGTGCGCTTTGCCATGAATCAACATCGACTGCCGGCTTCGTTCGGC CTTACCGGGGAGGGCGCCTG
Downstream 100 bases:
>100_bases GACCGATTGAGAGCGAAACGCGATGCACAATCCGAATGCTGTAAACGCCCCCGTCCAGACGTCCCAGCCGCCGCGCCTCG GTGAAGAAATCCTGCGCGTC
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: ABC Transporter Permease; ABC Transporter Membrane Protein; ABC Transporter Nitrate Permease; ABC Transporter; ABC Anion Transporter; ABC-Type Anion Transport System Permease Component; ABC Transport System Permease Protein; Transmembrane ABC Transporter Protein; Anion Transporter Permease Protein; Nitrate Transport System Permease Protein; Nitrate ABC Transporter Permease Protein; Anion ABC Transporter Permease; Taurine ABC Transporter Permease Protein; Nitrate ABC Transporter Permease; Sugar ABC Transporter; ABC Transporter Inner Membrane Subunit; Sugar ABC Transporter 1 Permease Protein; ABC Transporter Transmembrane Permease Protein; Sulfonate Transport Permease Protein; Nitrate Transport System Permease; ABC-Type Anion Transport System; ABC-Type Nitrate Transport Permease
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MNVGFFNPNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPIGVLQTQKISLDPSNLPEYALRTTLRMLAAM VASLAFTLVYGTLAAKSRRAGMVLIPILDILQSVPVLGFISFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQ SLRTVPRDLDEVSRGFHLTSWQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNQTITLPGIGAYLAQAISDK NFGAIGWVILTMTVVILAYDQLLFRPLIAWADKFRMENTASGDAPQSWLLDLVRRTRLIHQLLVPAGWFFAKAARIPLRL PLSGAMRFTLPKVEKKASRTVDIAWAGLVLIGTAYIVWRVVSFVATGVTMAEVGHVLVLGLITLLRVVVLISIASVIWVP IGVWVGLRPKLAEKLQPLAQFLAAFPANLLFPVFVIVIARFHLNADIWLSPLIVLGTQWYILFNVIAGATSYPNDYREAA TNFRIRGWQWWRQAILPGIFPYYVTGAITASGGAWNASIVSEAVQWGSTRIEAHGLGAYIAQTTAAGDFPKIILGIAVMS LFVTLFNRLLWRPLYAFAEAKLRLD
Sequences:
>Translated_585_residues MNVGFFNPNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPIGVLQTQKISLDPSNLPEYALRTTLRMLAAM VASLAFTLVYGTLAAKSRRAGMVLIPILDILQSVPVLGFISFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQ SLRTVPRDLDEVSRGFHLTSWQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNQTITLPGIGAYLAQAISDK NFGAIGWVILTMTVVILAYDQLLFRPLIAWADKFRMENTASGDAPQSWLLDLVRRTRLIHQLLVPAGWFFAKAARIPLRL PLSGAMRFTLPKVEKKASRTVDIAWAGLVLIGTAYIVWRVVSFVATGVTMAEVGHVLVLGLITLLRVVVLISIASVIWVP IGVWVGLRPKLAEKLQPLAQFLAAFPANLLFPVFVIVIARFHLNADIWLSPLIVLGTQWYILFNVIAGATSYPNDYREAA TNFRIRGWQWWRQAILPGIFPYYVTGAITASGGAWNASIVSEAVQWGSTRIEAHGLGAYIAQTTAAGDFPKIILGIAVMS LFVTLFNRLLWRPLYAFAEAKLRLD >Mature_585_residues MNVGFFNPNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPIGVLQTQKISLDPSNLPEYALRTTLRMLAAM VASLAFTLVYGTLAAKSRRAGMVLIPILDILQSVPVLGFISFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQ SLRTVPRDLDEVSRGFHLTSWQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNQTITLPGIGAYLAQAISDK NFGAIGWVILTMTVVILAYDQLLFRPLIAWADKFRMENTASGDAPQSWLLDLVRRTRLIHQLLVPAGWFFAKAARIPLRL PLSGAMRFTLPKVEKKASRTVDIAWAGLVLIGTAYIVWRVVSFVATGVTMAEVGHVLVLGLITLLRVVVLISIASVIWVP IGVWVGLRPKLAEKLQPLAQFLAAFPANLLFPVFVIVIARFHLNADIWLSPLIVLGTQWYILFNVIAGATSYPNDYREAA TNFRIRGWQWWRQAILPGIFPYYVTGAITASGGAWNASIVSEAVQWGSTRIEAHGLGAYIAQTTAAGDFPKIILGIAVMS LFVTLFNRLLWRPLYAFAEAKLRLD
Specific function: Unknown
COG id: COG4986
COG function: function code P; ABC-type anion transport system, duplicated permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64938; Mature: 64938
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVGFFNPNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPIGVLQTQKISL CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC DPSNLPEYALRTTLRMLAAMVASLAFTLVYGTLAAKSRRAGMVLIPILDILQSVPVLGFI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHH SFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQSLRTVPRDLDEVSRGFHLTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC WQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNQTITLPGIGAYLAQAISDK HHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCCEEECCCHHHHHHHHHCCC NFGAIGWVILTMTVVILAYDQLLFRPLIAWADKFRMENTASGDAPQSWLLDLVRRTRLIH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH QLLVPAGWFFAKAARIPLRLPLSGAMRFTLPKVEKKASRTVDIAWAGLVLIGTAYIVWRV HHHHCCHHHHHHHCCCCEECCCCCCCEECCHHHHHHHCCEEHHHHHHHHHHHHHHHHHHH VSFVATGVTMAEVGHVLVLGLITLLRVVVLISIASVIWVPIGVWVGLRPKLAEKLQPLAQ HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH FLAAFPANLLFPVFVIVIARFHLNADIWLSPLIVLGTQWYILFNVIAGATSYPNDYREAA HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH TNFRIRGWQWWRQAILPGIFPYYVTGAITASGGAWNASIVSEAVQWGSTRIEAHGLGAYI HCCEECHHHHHHHHHHCCHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHH AQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYAFAEAKLRLD HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNVGFFNPNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPIGVLQTQKISL CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC DPSNLPEYALRTTLRMLAAMVASLAFTLVYGTLAAKSRRAGMVLIPILDILQSVPVLGFI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHH SFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQSLRTVPRDLDEVSRGFHLTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC WQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNQTITLPGIGAYLAQAISDK HHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCCEEECCCHHHHHHHHHCCC NFGAIGWVILTMTVVILAYDQLLFRPLIAWADKFRMENTASGDAPQSWLLDLVRRTRLIH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH QLLVPAGWFFAKAARIPLRLPLSGAMRFTLPKVEKKASRTVDIAWAGLVLIGTAYIVWRV HHHHCCHHHHHHHCCCCEECCCCCCCEECCHHHHHHHCCEEHHHHHHHHHHHHHHHHHHH VSFVATGVTMAEVGHVLVLGLITLLRVVVLISIASVIWVPIGVWVGLRPKLAEKLQPLAQ HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH FLAAFPANLLFPVFVIVIARFHLNADIWLSPLIVLGTQWYILFNVIAGATSYPNDYREAA HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH TNFRIRGWQWWRQAILPGIFPYYVTGAITASGGAWNASIVSEAVQWGSTRIEAHGLGAYI HCCEECHHHHHHHHHHCCHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHH AQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYAFAEAKLRLD HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA