| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690416
Identifier: 116690416
GI number: 116690416
Start: 2657528
End: 2658022
Strand: Direct
Name: 116690416
Synonym: Bcen2424_2396
Alternate gene names: NA
Gene position: 2657528-2658022 (Clockwise)
Preceding gene: 116690415
Following gene: 116690419
Centisome position: 76.28
GC content: 69.49
Gene sequence:
>495_bases ATGAGCGTGGCGATCCGTATCGCGGCGATCGGCGCGCTGTGCGCGGCGACGGCCGCGCTGTCGGGCTGCGGCTCGGTCGG CGCGGCGAGCGGCGCGCTGGCCGGCGCGGCGACGGGCCTCGTCACCGCGAACCCGGCGGTCGGTGTCGGCGTCGGGATTG CCGTCCAGGCCGCGACCGACGAAGCCGTCAACCGCACGATGAAGCAGCTCCATCAGAATCAGCAGGACGCGATCGCGAAG ACGGCCGGCAGCCTCGCCGTCGGCGAAGTGAAGCCGTGGAAGGTGAAGAACACGCTGCCGCTGGAAAACGGCGAAGGCGA AGTGCGCGTCACGCGTGCGTACGCGTCGGCGCTCGCGCTGTGCAAGGAATTCGCGTTCTCGGTGAAGGACGGCGACAAGG CCGACTGGTACTTCGCGAATGCGTGCCAGCAAGGCACGCACTGGAAGTGGGCGTCCGCGGAACCGGCCGTCGACCGGTGG GGGAATTTGCAGTAA
Upstream 100 bases:
>100_bases CCGCGCAATCGGCGTTCTACGTCGCCACCCTCTGCCGCGACGGGGCCGTGTGGAAATGGGCATCGGCCGAACCGGCGACC GAACGCTGGGGCGCGCTGCA
Downstream 100 bases:
>100_bases CGGTGCGAGGCGCCGCGCGTCATGCGTGGCGCCCGTGGCGTTCCGCGATGCGCGGTTATACCGCGCGCCCCACCCGCATC AGGACTCGACGTCCTCGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MSVAIRIAAIGALCAATAALSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATDEAVNRTMKQLHQNQQDAIAK TAGSLAVGEVKPWKVKNTLPLENGEGEVRVTRAYASALALCKEFAFSVKDGDKADWYFANACQQGTHWKWASAEPAVDRW GNLQ
Sequences:
>Translated_164_residues MSVAIRIAAIGALCAATAALSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATDEAVNRTMKQLHQNQQDAIAK TAGSLAVGEVKPWKVKNTLPLENGEGEVRVTRAYASALALCKEFAFSVKDGDKADWYFANACQQGTHWKWASAEPAVDRW GNLQ >Mature_163_residues SVAIRIAAIGALCAATAALSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATDEAVNRTMKQLHQNQQDAIAKT AGSLAVGEVKPWKVKNTLPLENGEGEVRVTRAYASALALCKEFAFSVKDGDKADWYFANACQQGTHWKWASAEPAVDRWG NLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16769; Mature: 16638
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAIRIAAIGALCAATAALSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATD CCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCEEEEECCH EAVNRTMKQLHQNQQDAIAKTAGSLAVGEVKPWKVKNTLPLENGEGEVRVTRAYASALAL HHHHHHHHHHHCCHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCEEEHHHHHHHHHH CKEFAFSVKDGDKADWYFANACQQGTHWKWASAEPAVDRWGNLQ HHHHHHCCCCCCCCCEEEHHHHCCCCCCCCCCCCCHHHCCCCCC >Mature Secondary Structure SVAIRIAAIGALCAATAALSGCGSVGAASGALAGAATGLVTANPAVGVGVGIAVQAATD CEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCEEEEECCH EAVNRTMKQLHQNQQDAIAKTAGSLAVGEVKPWKVKNTLPLENGEGEVRVTRAYASALAL HHHHHHHHHHHCCHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCEEEHHHHHHHHHH CKEFAFSVKDGDKADWYFANACQQGTHWKWASAEPAVDRWGNLQ HHHHHHCCCCCCCCCEEEHHHHCCCCCCCCCCCCCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA