| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690395
Identifier: 116690395
GI number: 116690395
Start: 2641427
End: 2642377
Strand: Reverse
Name: 116690395
Synonym: Bcen2424_2375
Alternate gene names: NA
Gene position: 2642377-2641427 (Counterclockwise)
Preceding gene: 116690397
Following gene: 116690393
Centisome position: 75.85
GC content: 53.94
Gene sequence:
>951_bases ATGGGGAAAAGTCACAAGAAGCAACACTACGTGCCGGCGTCCTACCTCAAGGCGTGGTGCGATCCCGATCGCCCAGCGAC ACATGAGCCGTACGTGTGGGTGTTCGAGCGTGACGGTACAAGCCGCCATCGGCGTGCGCCGCACAAACTATTCACTGAGA CGGATATGTACACCATCGAAACGGCGGATGGTGGACGTGATCTGTGCATCGAAGCAACGCTTTCGATGCTGGAGGACAGA TTCACGCGAATGCGCATCAGCAAGTTCAATCACAAACGACCGCTGACACCTGAGGAGCACGTATATTTGTGTACGTTTGT CGCCGCTGCGCAGTTTCGCACCGCCGCCTCGCGCAATCATCATGCTTCGCAGTGGCAGAACGTCTTAAAGATCGCAGACG ACCTTGCTGCAAAAGTGAAGAGCGCAACCGCCGAGCAGCGCGAATCGATGGCGCGTATCTCGGAGCTTTCGTCTGGGGAG GGGCAGTCGTTCACACACGAGCAGGTACGCGAGCTCGCCGCCAAGCCCTTGCAAAAAATGATGGCTCCGGTTCTGCGTAC CACCGTGCCGATCCTTCTTCGAATGGATTTGGCGATCTACAGTACCAGTGATGAGACGGGGTTTATCACGTCGGACCGGC CATGTACGTGGTTCGATCCTGAGGCATATAAAATGCCACCATTCTTCAGAAGCCCTGCACTTGGCAGCGAGACTATAGAA GTGACGATGCCAATTTCCCCTCAGCAGTGTCTATGCCTAAACTGGCAGGGGTATGCGGGCTATTTAGATGCTTCGAAACT GCTACTCGATGAGTTCAACCGTCGGCATCGATTTCATTGCAAGAATCAATATGTCGTTCGAAATGATCTGAAAAACGACT ACTGGTTCTATGAGCAAGAAATCCCTGATGACGCGCGGGAGAAGCGTCACACAGGTGCAAGCGCAAAGTAA
Upstream 100 bases:
>100_bases AGTCTCGAAATGATCGGCTGGCGTGTGTTTGTAAGCCCACTCGACCTCGGCGCACTTCTTTGTCTCGCGTGACCGATGGC AAAAAAGAAAAGGCTCGGAC
Downstream 100 bases:
>100_bases CTTGAAGTAATCAAACTGCATCGCGCACCCGCATAATCGTTTGACGGCTCGTGCCGTAGCACTTCGCTAGACTCGCCACG CTCGCCCCCTGACTCAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MGKSHKKQHYVPASYLKAWCDPDRPATHEPYVWVFERDGTSRHRRAPHKLFTETDMYTIETADGGRDLCIEATLSMLEDR FTRMRISKFNHKRPLTPEEHVYLCTFVAAAQFRTAASRNHHASQWQNVLKIADDLAAKVKSATAEQRESMARISELSSGE GQSFTHEQVRELAAKPLQKMMAPVLRTTVPILLRMDLAIYSTSDETGFITSDRPCTWFDPEAYKMPPFFRSPALGSETIE VTMPISPQQCLCLNWQGYAGYLDASKLLLDEFNRRHRFHCKNQYVVRNDLKNDYWFYEQEIPDDAREKRHTGASAK
Sequences:
>Translated_316_residues MGKSHKKQHYVPASYLKAWCDPDRPATHEPYVWVFERDGTSRHRRAPHKLFTETDMYTIETADGGRDLCIEATLSMLEDR FTRMRISKFNHKRPLTPEEHVYLCTFVAAAQFRTAASRNHHASQWQNVLKIADDLAAKVKSATAEQRESMARISELSSGE GQSFTHEQVRELAAKPLQKMMAPVLRTTVPILLRMDLAIYSTSDETGFITSDRPCTWFDPEAYKMPPFFRSPALGSETIE VTMPISPQQCLCLNWQGYAGYLDASKLLLDEFNRRHRFHCKNQYVVRNDLKNDYWFYEQEIPDDAREKRHTGASAK >Mature_315_residues GKSHKKQHYVPASYLKAWCDPDRPATHEPYVWVFERDGTSRHRRAPHKLFTETDMYTIETADGGRDLCIEATLSMLEDRF TRMRISKFNHKRPLTPEEHVYLCTFVAAAQFRTAASRNHHASQWQNVLKIADDLAAKVKSATAEQRESMARISELSSGEG QSFTHEQVRELAAKPLQKMMAPVLRTTVPILLRMDLAIYSTSDETGFITSDRPCTWFDPEAYKMPPFFRSPALGSETIEV TMPISPQQCLCLNWQGYAGYLDASKLLLDEFNRRHRFHCKNQYVVRNDLKNDYWFYEQEIPDDAREKRHTGASAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36528; Mature: 36396
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKSHKKQHYVPASYLKAWCDPDRPATHEPYVWVFERDGTSRHRRAPHKLFTETDMYTIE CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHCCCHHHHCCCCEEEEE TADGGRDLCIEATLSMLEDRFTRMRISKFNHKRPLTPEEHVYLCTFVAAAQFRTAASRNH ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCC HASQWQNVLKIADDLAAKVKSATAEQRESMARISELSSGEGQSFTHEQVRELAAKPLQKM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH MAPVLRTTVPILLRMDLAIYSTSDETGFITSDRPCTWFDPEAYKMPPFFRSPALGSETIE HHHHHHHHHHHHHHEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE VTMPISPQQCLCLNWQGYAGYLDASKLLLDEFNRRHRFHCKNQYVVRNDLKNDYWFYEQE EEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCC IPDDAREKRHTGASAK CCCHHHHHHCCCCCCC >Mature Secondary Structure GKSHKKQHYVPASYLKAWCDPDRPATHEPYVWVFERDGTSRHRRAPHKLFTETDMYTIE CCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHCCCHHHHCCCCEEEEE TADGGRDLCIEATLSMLEDRFTRMRISKFNHKRPLTPEEHVYLCTFVAAAQFRTAASRNH ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCC HASQWQNVLKIADDLAAKVKSATAEQRESMARISELSSGEGQSFTHEQVRELAAKPLQKM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH MAPVLRTTVPILLRMDLAIYSTSDETGFITSDRPCTWFDPEAYKMPPFFRSPALGSETIE HHHHHHHHHHHHHHEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE VTMPISPQQCLCLNWQGYAGYLDASKLLLDEFNRRHRFHCKNQYVVRNDLKNDYWFYEQE EEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCC IPDDAREKRHTGASAK CCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA