| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690393
Identifier: 116690393
GI number: 116690393
Start: 2639179
End: 2640492
Strand: Reverse
Name: 116690393
Synonym: Bcen2424_2373
Alternate gene names: NA
Gene position: 2640492-2639179 (Counterclockwise)
Preceding gene: 116690395
Following gene: 116690392
Centisome position: 75.79
GC content: 45.97
Gene sequence:
>1314_bases ATGGGTGACTGGAAAACGGGGTTGCAAGTTGCGCGGCGAAAAATGAATGCTCAACGGTCGACAATAATTAAAATTCCGTC TGTTTTTTCATTCAAAAATCATGATGTCTACGATTTCGATCGGCCGCTGAAGACATTTGACTGGGGTCTGAGGGACCGCC CAGTTACGATTGATCTATCAGAGTGTAAATCTGCAAACTACCAGGCACTGTCGCTTATATCCCTCTATGCTTGGAAGCTG GTTTCACAGAGATGTCGAGTGTCATTCGTTCTCAATCCTGAAAACTCAGACGCAACCAAGATGTGGCGACTTATGGGGGC GACGAGTACCGTACAGACACTCTTGGATGAAAGTCAGAACTTCCCATCAAAGCCGTACAAACCGTTGATCGCGGTGAGAG AGGCTGCTGATTTCAAGTTGACTATAAGTAAAATTGAAGAATTCACGCAAGGATTTAATATTGAGTATGAAAATACCTTG CGATACGTTCTTTCGGAGTTGTTGTACAACACGCTTGAGCATGGGGCGTCGCATTTTCAGTATTACGGCAGGCAAAATCG GATGCCGAGTATTTGTCAGTGCACGTGGTACGAAGGAGTTAACGAAGTGCATTTCATCGTTGCTGATACCGGCATGGGGG TGAAGGCGCATCTCAGGCAAACTTACCCGACAATATCGGATGACTTGGAGGCCCTCCGAGCTTCGTTAAGGCCGAAGGTA TCTGGAACGTTCGGACGCTATGATCCGTATCAGGCAAAGAATAACGCTGGAATGGGGCTATTCTTGTCGTCGAATATCGT TCGACGCCTTGGTGCTGAGATGTACTTGGTGTCGGGGAGTGGGGTGATTCATGTTACTGCGCGTGATATTACGACGCGGG AATTGAAATACGGCTGGCCGGGTACTTTCGCATTGGTGACGGTGAAGCTTGATCGTGATGCGGAATTTGAGTTGCATAAA ATGATGCAGGAGTTCCGCGAGGCAGCTAATAGCGAGCAGAAAACGGCAGATGCGGTGGAGAGTGATGAGACATATTATTT AAGTATTTTTAATTACTTTGGTCCCAATGCTGAAGTTAAAGAGGAGGCGGTTCGTCATCGTGATAAATATCTGCTTCCTG CAATAGATCAAGGCAAAAAGATTTTGATTGATTTTGATCAAGTTAATAGTGCTCCGCATAGCTTTCTAAGTGCTCTTGTG GCGACTCCGGTAAAGAGGTTGGGTATGTCTGCATACAAGAGGCTTCGCATAATAAACGCGACTCCGGAAATTCGAGAGAC GATTGATTTTATTATGGACGAAAATACGGATTGA
Upstream 100 bases:
>100_bases GCCGTCTCCATGTTCCAGTCCGTGCGTAGGTTCCACTGTCGATAGCACCGATGCGCCGACACAACCGGTATGGGCTCGAT AAAAGAAAGAGTAAATTGAA
Downstream 100 bases:
>100_bases TATCAATTTGTTGGCTGATAATTCGCGTGGGTAGTTTGTGAGAGGCGGCTTGGGATATTGTTTGAGTGCTATTGGTCGGG TGTGTCAGAATTGAATCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MGDWKTGLQVARRKMNAQRSTIIKIPSVFSFKNHDVYDFDRPLKTFDWGLRDRPVTIDLSECKSANYQALSLISLYAWKL VSQRCRVSFVLNPENSDATKMWRLMGATSTVQTLLDESQNFPSKPYKPLIAVREAADFKLTISKIEEFTQGFNIEYENTL RYVLSELLYNTLEHGASHFQYYGRQNRMPSICQCTWYEGVNEVHFIVADTGMGVKAHLRQTYPTISDDLEALRASLRPKV SGTFGRYDPYQAKNNAGMGLFLSSNIVRRLGAEMYLVSGSGVIHVTARDITTRELKYGWPGTFALVTVKLDRDAEFELHK MMQEFREAANSEQKTADAVESDETYYLSIFNYFGPNAEVKEEAVRHRDKYLLPAIDQGKKILIDFDQVNSAPHSFLSALV ATPVKRLGMSAYKRLRIINATPEIRETIDFIMDENTD
Sequences:
>Translated_437_residues MGDWKTGLQVARRKMNAQRSTIIKIPSVFSFKNHDVYDFDRPLKTFDWGLRDRPVTIDLSECKSANYQALSLISLYAWKL VSQRCRVSFVLNPENSDATKMWRLMGATSTVQTLLDESQNFPSKPYKPLIAVREAADFKLTISKIEEFTQGFNIEYENTL RYVLSELLYNTLEHGASHFQYYGRQNRMPSICQCTWYEGVNEVHFIVADTGMGVKAHLRQTYPTISDDLEALRASLRPKV SGTFGRYDPYQAKNNAGMGLFLSSNIVRRLGAEMYLVSGSGVIHVTARDITTRELKYGWPGTFALVTVKLDRDAEFELHK MMQEFREAANSEQKTADAVESDETYYLSIFNYFGPNAEVKEEAVRHRDKYLLPAIDQGKKILIDFDQVNSAPHSFLSALV ATPVKRLGMSAYKRLRIINATPEIRETIDFIMDENTD >Mature_436_residues GDWKTGLQVARRKMNAQRSTIIKIPSVFSFKNHDVYDFDRPLKTFDWGLRDRPVTIDLSECKSANYQALSLISLYAWKLV SQRCRVSFVLNPENSDATKMWRLMGATSTVQTLLDESQNFPSKPYKPLIAVREAADFKLTISKIEEFTQGFNIEYENTLR YVLSELLYNTLEHGASHFQYYGRQNRMPSICQCTWYEGVNEVHFIVADTGMGVKAHLRQTYPTISDDLEALRASLRPKVS GTFGRYDPYQAKNNAGMGLFLSSNIVRRLGAEMYLVSGSGVIHVTARDITTRELKYGWPGTFALVTVKLDRDAEFELHKM MQEFREAANSEQKTADAVESDETYYLSIFNYFGPNAEVKEEAVRHRDKYLLPAIDQGKKILIDFDQVNSAPHSFLSALVA TPVKRLGMSAYKRLRIINATPEIRETIDFIMDENTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49972; Mature: 49841
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDWKTGLQVARRKMNAQRSTIIKIPSVFSFKNHDVYDFDRPLKTFDWGLRDRPVTIDLS CCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEHH ECKSANYQALSLISLYAWKLVSQRCRVSFVLNPENSDATKMWRLMGATSTVQTLLDESQN HCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCC FPSKPYKPLIAVREAADFKLTISKIEEFTQGFNIEYENTLRYVLSELLYNTLEHGASHFQ CCCCCCCHHHHHHCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH YYGRQNRMPSICQCTWYEGVNEVHFIVADTGMGVKAHLRQTYPTISDDLEALRASLRPKV HHCCCCCCCHHEEEEHHCCCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC SGTFGRYDPYQAKNNAGMGLFLSSNIVRRLGAEMYLVSGSGVIHVTARDITTRELKYGWP CCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCEEEEECCCEEEEEECCCEEHHCCCCCC GTFALVTVKLDRDAEFELHKMMQEFREAANSEQKTADAVESDETYYLSIFNYFGPNAEVK CEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEECCCCCCHHH EEAVRHRDKYLLPAIDQGKKILIDFDQVNSAPHSFLSALVATPVKRLGMSAYKRLRIINA HHHHHHCCCEECCCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHEEEECC TPEIRETIDFIMDENTD CHHHHHHHHHHHCCCCC >Mature Secondary Structure GDWKTGLQVARRKMNAQRSTIIKIPSVFSFKNHDVYDFDRPLKTFDWGLRDRPVTIDLS CCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEHH ECKSANYQALSLISLYAWKLVSQRCRVSFVLNPENSDATKMWRLMGATSTVQTLLDESQN HCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCC FPSKPYKPLIAVREAADFKLTISKIEEFTQGFNIEYENTLRYVLSELLYNTLEHGASHFQ CCCCCCCHHHHHHCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH YYGRQNRMPSICQCTWYEGVNEVHFIVADTGMGVKAHLRQTYPTISDDLEALRASLRPKV HHCCCCCCCHHEEEEHHCCCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC SGTFGRYDPYQAKNNAGMGLFLSSNIVRRLGAEMYLVSGSGVIHVTARDITTRELKYGWP CCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCEEEEECCCEEEEEECCCEEHHCCCCCC GTFALVTVKLDRDAEFELHKMMQEFREAANSEQKTADAVESDETYYLSIFNYFGPNAEVK CEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEECCCCCCHHH EEAVRHRDKYLLPAIDQGKKILIDFDQVNSAPHSFLSALVATPVKRLGMSAYKRLRIINA HHHHHHCCCEECCCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHEEEECC TPEIRETIDFIMDENTD CHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA