| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690391
Identifier: 116690391
GI number: 116690391
Start: 2637736
End: 2637999
Strand: Reverse
Name: 116690391
Synonym: Bcen2424_2371
Alternate gene names: NA
Gene position: 2637999-2637736 (Counterclockwise)
Preceding gene: 116690392
Following gene: 116690390
Centisome position: 75.72
GC content: 58.71
Gene sequence:
>264_bases ATGCCCGTAAAGAACATCCCCCCGCTGCCTACTCCGGCCGCGCTTCCGCTTGACGGTCTCTCGCGCTGGGAAAGTCTGCG TTCGTCCATCCAGTTGTCCCGTGAAACTGTCCGACAGAGAGAGCGTGAGGGGAAGTTTCCGCGCTCGATCCGCCTGACTC AGCGCTGCACTGTCTGGAGTAATCGCGAGATCCATCGCTATCTCGCTGATCCGTTGAACTATCGGGTTGTCGACGTTGCA AATGAAGTGACGGAGGGCGTGTGA
Upstream 100 bases:
>100_bases CGAAACGGCAAAAAACAATCCGTGTTTTCGCCCGATGTACTCCCTTAAATTGCAGGCTGTCGATGCCAATGGTGGCACAG ACATGCTTAAGGGAGCACAA
Downstream 100 bases:
>100_bases TGACGAACCGCCTGAACGTAACGGACGCGCGCGCAATTGCGCGTGACGCCAAGAAGCATGCGGACGCGGCTTTCTATGAA AGTGAGCTGGAGCGTCAGCG
Product: phage transcriptional regulator, AlpA
Products: NA
Alternate protein names: Phage Transcriptional Regulator; Conserved Domain Protein; Prophage CP4-57 Regulatory Protein; Prophage CP4-57 Regulatory
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MPVKNIPPLPTPAALPLDGLSRWESLRSSIQLSRETVRQREREGKFPRSIRLTQRCTVWSNREIHRYLADPLNYRVVDVA NEVTEGV
Sequences:
>Translated_87_residues MPVKNIPPLPTPAALPLDGLSRWESLRSSIQLSRETVRQREREGKFPRSIRLTQRCTVWSNREIHRYLADPLNYRVVDVA NEVTEGV >Mature_86_residues PVKNIPPLPTPAALPLDGLSRWESLRSSIQLSRETVRQREREGKFPRSIRLTQRCTVWSNREIHRYLADPLNYRVVDVAN EVTEGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10068; Mature: 9936
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVKNIPPLPTPAALPLDGLSRWESLRSSIQLSRETVRQREREGKFPRSIRLTQRCTVWS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCC NREIHRYLADPLNYRVVDVANEVTEGV CCHHHHHHCCCCCEEHHHHHHHHHCCC >Mature Secondary Structure PVKNIPPLPTPAALPLDGLSRWESLRSSIQLSRETVRQREREGKFPRSIRLTQRCTVWS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCC NREIHRYLADPLNYRVVDVANEVTEGV CCHHHHHHCCCCCEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA