| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is traC [H]
Identifier: 116690386
GI number: 116690386
Start: 2632749
End: 2635625
Strand: Reverse
Name: traC [H]
Synonym: Bcen2424_2366
Alternate gene names: 116690386
Gene position: 2635625-2632749 (Counterclockwise)
Preceding gene: 116690387
Following gene: 116690385
Centisome position: 75.65
GC content: 67.54
Gene sequence:
>2877_bases ATGAGTATCGCACCCATGTCCGAATTCGAGCGGGCGAGAGTCGCGCTCGGCTATGTTCCGCCCGACGACCGCGACACGTG GAGTCAGGTGGGGATGGCGCTCAAGGCCGAGTTTGGCGAGGAGGGCTTCGCCCTCTGGAACGAATGGAGCCAAGGCGCGC AGAACTACAACGTCAAGGACGCGCGCGATGTGTGGAAGTCGTTCAAGGGCGGCAAGATCACCATCAACACGCTGTTTCAC CTCGCCAAGCTCGGCGGCTTCGATCCGCGCGCGTATCGGGCGAAGCCGGTCGATCCAGCGGAGCGCGAGCGGCAGAAGGC CGAACGCGCGGCCCGCGAAGCGGCCGAGCTGGCGGAGCTGACCGAGAAACAGCAAACCGCATCGGCGCTCGCCGAATCGC TATGGTCGGCGGCCGAGCCTGCACCGGCCGATCACCCGTATCTCGTTCGCAAGCGCATCCCGGTCGACGCGCTGCGCGTC TATCGCGGCGGCTTGTGCATCGGCACGGCCGCATGCGACGGCGCACTCGTCATTCCGGCCCGTGACGCTGACGGCAAGCT GTGGACGCTGGAGTTCGTCCTGACGGACGGCCAGAAACGCTATCTGCCGAACGGCCGCAAGGCGGGCTGCTTCTCGCTGA TCGGTGGCCCGTTATCTTCCGCGCCGTCCACGCTGCTGATTGGCGAGGGTTACGCCACGTGCGCGACGCTCGCGGCCGCG ACCGGCTATCCGGCCGCCGTCGCGTTCGACGCCGGCAACCTGCACGCCGTGGCGACGGCGCTGCGCGGCCAGTACCCGGA CGCCCGCATCGTCGTGTGCGCCGACGACGACCACACGACGAAGGGCAATCCGGGCGTGACGAAGGCTCGCGCGGCGGCCG AGGCCGTCGCCGGCATCGTCGCGGTGCCTGACTTCGGTCCGAACCGCCCGGCCGCCGGCACCGACTTCAACGACCTGGCT GCGCACGTCGGGCCGGATGCGGTGGCCGCCGCCGTGCGCGCTGCGCTCGCCCCGGCCGGCTCGGCGGACGCCGGCAAGGC CAAGGCTACTCCAGTCGCCGCGAAACCCGCCAAGCGCCCGAAAACGGCCCGCGCGCAGGACGGCAAGTCGCGGTTCGTCG TCGACGACAAGGGCGTGTGGTTTCACGGCTTCAACAATCAGGGCGACCCTCTCCCGCCGCATTGGGTCAGCACGCGGATC GACGTGATCGCGGAGACGCGCAACGAGATGAACAGCGAGTGGGGATACCTGCTCGAATTCACGGATCGCGACGGCATCCT GAAACGGTGGGCGGTGCCGGCCGGCCTCTTTGCCGGCGACGGCACGGAGCTGCGCCGCATGCTGCTCGATATGGGCGTGA AGCTTGGCGTGACGCAGATCGCCCGCACGCAGATCGCGAACTATGTCCAGATGGCGCAGCCGGACGAGCGCGTGCGCTGC GTGCCGCGCGTCGGCTGGCATCACGGCGCGTTCGTGCTGCCCGATCGCGTCATCGGCACCGGCAAAGAGGCGCTGATCTA TCAGGCCGATACGCCGATTCAGAGCCAGTTCAAAGAGCGCGGCACGCTGGACGACTGGCAACGCGAGGTTGCAGCCTACT GCGTCGGCAATAGCCGGCTGCTGTTCTGCGTCGCAACCGCCTTCGCTGGTCCGCTGCTGCACTTCTCCGGGCTTCAGTCG GGCGGTTTTCACCTGCTAGGCACAACGTCCAAGGGCAAGTCGACGGGCGGCGTCATCGCAGCGTCCGTGTTCGGCTCGCC GGACTATGTGCGGAGCTGGAAGGCGACCGACAACGCGCTCGAAGCGGTCGCCACGCAGCACAGCGACGCGCTGCTGATCC TCGACGAAATCGGGCAGGTCGAGCCGCGCTTGGTTGGCGATGTGATCTACATGCTCGCGAACGAGTCGGGCAAGGCTCGC GCATCGCGTAGCGGCTCGGCAAAGCCGGTTCTCACGTGGCGGCTGCTGTTCCTGTCGAATGGCGAAAAGAGCGTGTCCGC GCTGATGGCCGAGGGCAACAAGCCCATGAAAGGCGGTATCGAAGTGCGCTTGCCCGCGATCCCGGCCGAGGTCGGCGAAA TGGGCGTCGTGGAGAAGCTGCACGGCTTCCCGACGCCGGCCGCGCTGATCGAGCATCTAGAGCGGCACGCGGGCATGCAC TACGGCACGGCCGGCCCCGCGTTCATCGAGTGGGCGTCGTCGCAGGCCGGCGAGCTGGCCGAGCATCTGCGTGTTCGCGT TGACGAGCTGGTCGGGCAATGGGTACCGGACGGTTCGCATTCGCAGGTCGCGCGTGTCGCCAAGCGGTTCTGCCTTGTCG CGGTGGCCGGCGAGCTGGCGACGGCGCACGGCCTGACCGGTTGGCCGCAAGGCGAAGCGGTCGAGGCCGCGCGTCGCTGC TTCGAAGGCTGGCTCGAACTGCGCGGCGGCACCGGCAACTCGGACGAGGCCGAAGCCGTGCGGCAGGTACAGCATTTCCT CGCCGCACACGGCGACAACCGATTCGTTTGGATGAACCGGGCGCAGGACGACCACCGGCCGAATGTGCCGCATCGAGCGG GCTTCAAGCAGCATGTGAAGCGCGACGAGCGGCGCACGCCCATCGCGTCCGATCGGGAGTATTACGCCGAGTTCGGCGGC AAGATGAGCGCCGACGATGCCGAAAGCGTCGAGACGGAATACCTGATCGAAGCGGCCGTGTTTCGCAAGGACGTGTGCGC CGGCTTCGATCACAAGATCGTCGCCAAGGCACTGATGAAGCGCGGCGTGCTGATGCCGCGCAGCGACGGCTATCCGTACC GGCAGGAGTACATCCCCGGTCACGGCAAGTTCATGGTCTATCGCGTGCTGCCGTCGATCTTCACGCTTGAGCTGTGA
Upstream 100 bases:
>100_bases AGGCATCGTCACATCATTCAATTCTTCGCGCGTCGGGTAGCTGCTTGCCCGATATGGACTACTAATCGGAAGCCGACCGA CGCGCGTCCAGTGGGAACCT
Downstream 100 bases:
>100_bases ACAGCACCGCCGCCGTCCGGGAGGGCGGTGGCGGGCATTCCTTTGCGCGGCATATTTCTCCCGCGCGTCAAAGTTACTTT GAGCGATACGTGCCAGACGG
Product: inner membrane protein
Products: NA
Alternate protein names: Replication primase [H]
Number of amino acids: Translated: 958; Mature: 957
Protein sequence:
>958_residues MSIAPMSEFERARVALGYVPPDDRDTWSQVGMALKAEFGEEGFALWNEWSQGAQNYNVKDARDVWKSFKGGKITINTLFH LAKLGGFDPRAYRAKPVDPAERERQKAERAAREAAELAELTEKQQTASALAESLWSAAEPAPADHPYLVRKRIPVDALRV YRGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA TGYPAAVAFDAGNLHAVATALRGQYPDARIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLA AHVGPDAVAAAVRAALAPAGSADAGKAKATPVAAKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRI DVIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC VPRVGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQS GGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKAR ASRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVEKLHGFPTPAALIEHLERHAGMH YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPQGEAVEAARRC FEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGG KMSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL
Sequences:
>Translated_958_residues MSIAPMSEFERARVALGYVPPDDRDTWSQVGMALKAEFGEEGFALWNEWSQGAQNYNVKDARDVWKSFKGGKITINTLFH LAKLGGFDPRAYRAKPVDPAERERQKAERAAREAAELAELTEKQQTASALAESLWSAAEPAPADHPYLVRKRIPVDALRV YRGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA TGYPAAVAFDAGNLHAVATALRGQYPDARIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLA AHVGPDAVAAAVRAALAPAGSADAGKAKATPVAAKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRI DVIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC VPRVGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQS GGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKAR ASRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVEKLHGFPTPAALIEHLERHAGMH YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPQGEAVEAARRC FEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGG KMSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL >Mature_957_residues SIAPMSEFERARVALGYVPPDDRDTWSQVGMALKAEFGEEGFALWNEWSQGAQNYNVKDARDVWKSFKGGKITINTLFHL AKLGGFDPRAYRAKPVDPAERERQKAERAAREAAELAELTEKQQTASALAESLWSAAEPAPADHPYLVRKRIPVDALRVY RGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAAT GYPAAVAFDAGNLHAVATALRGQYPDARIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLAA HVGPDAVAAAVRAALAPAGSADAGKAKATPVAAKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRID VIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRCV PRVGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQSG GFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARA SRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVEKLHGFPTPAALIEHLERHAGMHY GTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPQGEAVEAARRCF EGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGK MSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL
Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]
COG id: COG5519
COG function: function code L; Superfamily II helicase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013610 - InterPro: IPR006171 [H]
Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 103631; Mature: 103500
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIAPMSEFERARVALGYVPPDDRDTWSQVGMALKAEFGEEGFALWNEWSQGAQNYNVKD CCCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH ARDVWKSFKGGKITINTLFHLAKLGGFDPRAYRAKPVDPAERERQKAERAAREAAELAEL HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TEKQQTASALAESLWSAAEPAPADHPYLVRKRIPVDALRVYRGGLCIGTAACDGALVIPA HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCEEEEEC RDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA CCCCCCEEEEEEEEECCCHHCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHHH TGYPAAVAFDAGNLHAVATALRGQYPDARIVVCADDDHTTKGNPGVTKARAAAEAVAGIV CCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCEE AVPDFGPNRPAAGTDFNDLAAHVGPDAVAAAVRAALAPAGSADAGKAKATPVAAKPAKRP ECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC KTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRIDVIAETRNEMNSEWGYLLEF CCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE TDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC ECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE VPRVGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRL ECCCCCCCCCEECCCHHCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEE LFCVATAFAGPLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNAL EEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCCCHHHH EAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSN HHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECC GEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVEKLHGFPTPAALIEHLERHAGMH CCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELA CCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TAHGLTGWPQGEAVEAARRCFEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNR HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC AQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGKMSADDAESVETEYLIEAAV CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH FRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEHEEHHHHHHEECC >Mature Secondary Structure SIAPMSEFERARVALGYVPPDDRDTWSQVGMALKAEFGEEGFALWNEWSQGAQNYNVKD CCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH ARDVWKSFKGGKITINTLFHLAKLGGFDPRAYRAKPVDPAERERQKAERAAREAAELAEL HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TEKQQTASALAESLWSAAEPAPADHPYLVRKRIPVDALRVYRGGLCIGTAACDGALVIPA HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCEEEEEC RDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA CCCCCCEEEEEEEEECCCHHCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHHH TGYPAAVAFDAGNLHAVATALRGQYPDARIVVCADDDHTTKGNPGVTKARAAAEAVAGIV CCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCEE AVPDFGPNRPAAGTDFNDLAAHVGPDAVAAAVRAALAPAGSADAGKAKATPVAAKPAKRP ECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC KTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRIDVIAETRNEMNSEWGYLLEF CCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE TDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC ECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE VPRVGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRL ECCCCCCCCCEECCCHHCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEE LFCVATAFAGPLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNAL EEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCCCHHHH EAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSN HHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECC GEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVEKLHGFPTPAALIEHLERHAGMH CCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELA CCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TAHGLTGWPQGEAVEAARRCFEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNR HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC AQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGKMSADDAESVETEYLIEAAV CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH FRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEHEEHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1818755 [H]