Click here to switch to the map view.

The map label for this gene is yahB [H]

Identifier: 116690377

GI number: 116690377

Start: 2620187

End: 2621071

Strand: Direct

Name: yahB [H]

Synonym: Bcen2424_2357

Alternate gene names: 116690377

Gene position: 2620187-2621071 (Clockwise)

Preceding gene: 116690375

Following gene: 116690383

Centisome position: 75.21

GC content: 70.4

Gene sequence:

>885_bases
ATGCACCACGCCCCGGAAGCCCTGCTCGCATTCGCCGAAGCGGCGCTGCTCGGCTCGTTTACGGCCGCCGCACGCAAGCT
CGGCAAGCGCCAGTCGACGGTGTCGGAAGCGATCGCGAATCTCGAAATCGACCTCGGCGTGCAACTGTTCGATCGCTCGA
CGCGCGCGCCGACGCTCACCGACGCCGGCCGCGCGCTGCTGCCGCACGTGCAGCGCGCGCTCGAGGCCAGCGCGGCGATC
GACCGCACGGCCGCCCGGCTCGCGCACGGAGAGGAAGCGCGGCTCACGCTCGTCGTCTCGGATACGTACCAGTCGAAGCG
CTACGAAGAGACGTTGATGGCGCTCGAACGGCGTTTTCCGGCGCTCGAGCTCGAATGCCAGATCGCCGAGCACGACGACG
TCCTCGACCTGATCCAGCAAGGCCGCGCGCAACTCGGGCTGATGGCCGCGCGCGCGGCCTATCCCGCCGATATCGGCGCG
GCGACCGTAGCGGAGAAATCGGAGATCGGGCTGTTCGTCGGCCGCACGCACGCGCTCGCCGCATATGGCGACGCCGAGGT
GCCGCACGCGGCGCTGCGCGACGTGCGCGAACTGCGCCTCAATACCTACGTGAAAACGGAAGGTCGCGGCACCGACGACC
GGATCGTCGTCGGCACGCAGCACTGGCTCGCGCCGAGCTACCTGATGCTGCTGGAGATGGCGGTGCTGGGGTTCGGCTGG
GCTGAACTGCCGCGCTGGATGGTCGAGCACTTCGCGCGCGACCGCCTGTGCGAGCTGCATGCGCGCGGCTGGCCGCGCCG
CGTGCGGGTGGATGCTGTCTGGTCGCGCAACCGGCCGCTCGGGCCGGCCGGGTCATGGCTGCTCGATGCGATGCTGGCCG
CGTAG

Upstream 100 bases:

>100_bases
TGCGTTACCTGATCCATGTCGGCCATTTTGATCGGCACAACCGTATGAATCCAGTTTGATATCATCGGTTTTACCGATAT
AACGCTGCCAGGAGCCCTGC

Downstream 100 bases:

>100_bases
CGGCGCGTGTGCCGTCGAGCCTGCCGGGGACGGAGGGCTGAGGGCTGGCGCCAGCCGGTCAGAAACCGCGCGACAGCACG
GCCGCGCCGATCGTGACGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MHHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRAPTLTDAGRALLPHVQRALEASAAI
DRTAARLAHGEEARLTLVVSDTYQSKRYEETLMALERRFPALELECQIAEHDDVLDLIQQGRAQLGLMAARAAYPADIGA
ATVAEKSEIGLFVGRTHALAAYGDAEVPHAALRDVRELRLNTYVKTEGRGTDDRIVVGTQHWLAPSYLMLLEMAVLGFGW
AELPRWMVEHFARDRLCELHARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA

Sequences:

>Translated_294_residues
MHHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRAPTLTDAGRALLPHVQRALEASAAI
DRTAARLAHGEEARLTLVVSDTYQSKRYEETLMALERRFPALELECQIAEHDDVLDLIQQGRAQLGLMAARAAYPADIGA
ATVAEKSEIGLFVGRTHALAAYGDAEVPHAALRDVRELRLNTYVKTEGRGTDDRIVVGTQHWLAPSYLMLLEMAVLGFGW
AELPRWMVEHFARDRLCELHARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA
>Mature_294_residues
MHHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRAPTLTDAGRALLPHVQRALEASAAI
DRTAARLAHGEEARLTLVVSDTYQSKRYEETLMALERRFPALELECQIAEHDDVLDLIQQGRAQLGLMAARAAYPADIGA
ATVAEKSEIGLFVGRTHALAAYGDAEVPHAALRDVRELRLNTYVKTEGRGTDDRIVVGTQHWLAPSYLMLLEMAVLGFGW
AELPRWMVEHFARDRLCELHARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=252, Percent_Identity=28.1746031746032, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=30.9090909090909, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=27.7027027027027, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32385; Mature: 32385

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRAPTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCCC
DAGRALLPHVQRALEASAAIDRTAARLAHGEEARLTLVVSDTYQSKRYEETLMALERRFP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
ALELECQIAEHDDVLDLIQQGRAQLGLMAARAAYPADIGAATVAEKSEIGLFVGRTHALA
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCEEEECHHHEE
AYGDAEVPHAALRDVRELRLNTYVKTEGRGTDDRIVVGTQHWLAPSYLMLLEMAVLGFGW
ECCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCH
AELPRWMVEHFARDRLCELHARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MHHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRAPTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCCC
DAGRALLPHVQRALEASAAIDRTAARLAHGEEARLTLVVSDTYQSKRYEETLMALERRFP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
ALELECQIAEHDDVLDLIQQGRAQLGLMAARAAYPADIGAATVAEKSEIGLFVGRTHALA
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCEEEECHHHEE
AYGDAEVPHAALRDVRELRLNTYVKTEGRGTDDRIVVGTQHWLAPSYLMLLEMAVLGFGW
ECCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCH
AELPRWMVEHFARDRLCELHARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]