| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690354
Identifier: 116690354
GI number: 116690354
Start: 2595556
End: 2596731
Strand: Direct
Name: 116690354
Synonym: Bcen2424_2333
Alternate gene names: NA
Gene position: 2595556-2596731 (Clockwise)
Preceding gene: 116690353
Following gene: 116690355
Centisome position: 74.5
GC content: 65.14
Gene sequence:
>1176_bases ATGCTGCTCAATTTCTTCTACGCGCTGCGCGCAGCCAAGCTGCCCGTCTCGGTGAAGGAATACCTGACGCTGCTCGAATC GCTGAAGGCCGGGCTGATCTCGCCGTCGATCGACGCGTTCTACTTCCTCGCGCGGATGACGCTCGTCAAGGACGAGCAGT ACTTCGACAAGTTCGACCAGGCGTTCGGTGCGTATTTCCATGGCGTGTCCACGCTACCGTCCGAGGCGTTCGACATCCCG CTCGACTGGCTCGAGAAGCGCCTCGAGCGCGAACTGTCGCCGGAGGAGAAGGCGCAGATCGACGCGATGGGCGGGCTCGA CAAGCTGATGGAGCGTTTGAAGGCGCTGCTCGACGAGCAGAAGGAACGCCACGAAGGCGGCAACAAGTGGATCGGCACGG GCGGCACGTCGCCGTTCGGGCACGGCGGCTACAACCCGGAAGGCGTGCGCATCGGCGGCCCGTCGAACGGCAACCGCACC GCGGTGAAGGTGTGGGAAGCACGCGCGTACCGCGACTACGACGATTCGGTCGAGATCGGCACGCGCAACATCAAGGTCGC GCTGCGGCGGCTGCGCCGCTTCGCGCGCGAAGGCGCCGCCGAGGAGCTCGACCTGCCCGGCACGATCCGCAGCACGGCCG CGAACGCGGGCTGGCTCGACCTGCGGATGGTGCCCGAGCGCCACAACAACGTGAAGGTGCTGATGCTGCTGGACGTCGGC GGCTCGATGGACGACCACATCAAGCGCACCGAAGAGCTGTTCTCGGCCGCGAAGGCCGAATTCAAGCACCTCGAATTCTT CTACTTCCACAACTGCGTGTACGACCACCTGTGGAAGAACAACCGCCGCCGCCACGCGGAACGCACCGCGACGTGGGACG TACTGCACAAGTTCACGCCCGACTACAAGCTGATCTTCGTCGGCGACGCGACGATGAGCCCGTACGAAGTGCTGCAGCCC GGCGGCTCGGTCGAATACAACAACCCGGAAGCCGGCGCCGTGTGGCTGCGTCGTCTCGCCGACCAGTTTCCGCATCATGC ATGGCTGAACCCCGAGCCCGAGCGACTATGGGAGTACCGGCAGTCGGTCGCGGTCATCCGCGACCTGCTCGGCCATCGCA TGTATCCGCTCACGCTCGCGGGCCTCGAAACCGCGATGCGCGCACTCAGCAAGTAA
Upstream 100 bases:
>100_bases GCGCTGCTGAAGAACGAGCAGGATCTGAGCCTGCTCGAGCGGCTCGTCTACATGAACCGGCACAACCGGTAATCCTCCCT CACCCCGCGAAGGCCCGGCC
Downstream 100 bases:
>100_bases CGACACCCACTCGCAGATATACAGGCCGCATCCGAGCGGCCGCCCCGGAGAGAGCATGAACCCTTCGTCCACCGCGAGTG CCGGCCGCGCCGGCGGCCGC
Product: VWA containing CoxE family protein
Products: NA
Alternate protein names: Cytoplasmic Protein; VWA Containing CoxE-Like Family Protein; Von Willebrand Factor Type A(VWA) Domain Protein
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSTLPSEAFDIP LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKALLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFFYFHNCVYDHLWKNNRRRHAERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGHRMYPLTLAGLETAMRALSK
Sequences:
>Translated_391_residues MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSTLPSEAFDIP LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKALLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFFYFHNCVYDHLWKNNRRRHAERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGHRMYPLTLAGLETAMRALSK >Mature_391_residues MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSTLPSEAFDIP LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKALLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFFYFHNCVYDHLWKNNRRRHAERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGHRMYPLTLAGLETAMRALSK
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44761; Mature: 44761
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQ CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AFGAYFHGVSTLPSEAFDIPLDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKALLDEQ HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH KERHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG HHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHCCCCCCHHHC TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC GSMDDHIKRTEELFSAAKAEFKHLEFFYFHNCVYDHLWKNNRRRHAERTATWDVLHKFTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYR CEEEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QSVAVIRDLLGHRMYPLTLAGLETAMRALSK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQ CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AFGAYFHGVSTLPSEAFDIPLDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKALLDEQ HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH KERHEGGNKWIGTGGTSPFGHGGYNPEGVRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG HHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHCCCCCCHHHC TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC GSMDDHIKRTEELFSAAKAEFKHLEFFYFHNCVYDHLWKNNRRRHAERTATWDVLHKFTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYR CEEEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QSVAVIRDLLGHRMYPLTLAGLETAMRALSK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA