Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is ygfF [H]

Identifier: 116690296

GI number: 116690296

Start: 2528460

End: 2529221

Strand: Direct

Name: ygfF [H]

Synonym: Bcen2424_2275

Alternate gene names: 116690296

Gene position: 2528460-2529221 (Clockwise)

Preceding gene: 116690295

Following gene: 116690297

Centisome position: 72.58

GC content: 72.44

Gene sequence:

>762_bases
ATGACCGCACCGTCCGACCGCAAGGTAGTCCTCATCACCGGCGCGAGCCGCGGCATCGGCCGCGCGACCGCCGTGCTCGC
GGCCGAACGCGGCTGGGACGTCGGCATCAACTACGCGCGCGACGCGGCAGCGGCCCAACTGACCGCGCAGGCCGTGCGCG
ACGCGGGCGGCCGCGCGTGCATCGTCGCGGGCGATGTCGCGAACGAGACGGACGTCGTCGCGATGTTCGATACGGTTGCG
GCCGAGTTCGGGCGCCTCGACGCGCTCGTGAACAATGCAGGCATCGTCGCGCCGTCGATGCCGCTCGCCGACATGCCGGC
CGACCGGCTGCGGCGGATGTTCGATACCAACGTGCTCGGCGCCTACCTGTGCGCACGGGAAGCCGCGCGCCGGCTGTCGA
CCGACCGTGGCGGCCGCGGCGGCGCGATCGTCAACGTGTCGTCGATCGCGTCGCGGCTCGGCTCGCCGAACGAGTACGTC
GACTACGCGGGCTCGAAAGGCGCGGTCGATTCGCTGACGATCGGCCTGGCAAAGGAACTCGGCCCGCATGGCGTGCGCGT
CAACGCGGTGCGCCCCGGCCTGATCGAGACCGAAATTCATGCAAGCGGCGGCCAGCCAGGCCGCGCCGCCCGTCTCGGCG
CACAAACGCCGCTCGGCCGCGCGGGCGAGGCACAGGAGATCGCCGAGGCGATCGTCTGGCTGCTCGGCGATGCGGCCTCC
TACACGACGGGCGCCCTGCTCGACGTCGGCGGCGGCCGCTAA

Upstream 100 bases:

>100_bases
CCCGTCGCGCTGATCGAGCGGCTGCGCCACTACCAGCCGCCCGCCCGCGACAAGTGGGCGCCCGACGCAGCGAAGTGATC
CTCACCGGAAACCGCACGCG

Downstream 100 bases:

>100_bases
GCTGACACGCGGCGCAACAATACGGCTGACGAAAACGCCCCGTGGTCACGGCGCCACAAATCTCCACAATTCCGTGACAG
TTTCAGTAAACATCCGTAAC

Product: glucose-1-dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTAPSDRKVVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAQLTAQAVRDAGGRACIVAGDVANETDVVAMFDTVA
AEFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYV
DYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS
YTTGALLDVGGGR

Sequences:

>Translated_253_residues
MTAPSDRKVVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAQLTAQAVRDAGGRACIVAGDVANETDVVAMFDTVA
AEFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYV
DYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS
YTTGALLDVGGGR
>Mature_252_residues
TAPSDRKVVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAQLTAQAVRDAGGRACIVAGDVANETDVVAMFDTVAA
EFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD
YAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAASY
TTGALLDVGGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=36.3265306122449, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=36.5461847389558, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=35.1758793969849, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=30.9236947791165, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=28.6885245901639, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=32.6693227091633, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=29.0196078431373, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=33.495145631068, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=33.495145631068, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=31.2252964426877, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4758504, Length=238, Percent_Identity=28.9915966386555, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=31.6831683168317, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40254986, Length=204, Percent_Identity=30.8823529411765, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=207, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=32.4175824175824, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI166795268, Length=210, Percent_Identity=30.4761904761905, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI83715985, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=52.6530612244898, Blast_Score=274, Evalue=4e-75,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=37.5, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=33.9920948616601, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=35.4838709677419, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=31.3008130081301, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.6032388663968, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=34.0163934426229, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=29.6, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=29.9595141700405, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=33.2046332046332, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789057, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=29.0196078431373, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=26.1044176706827, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787891, Length=249, Percent_Identity=29.718875502008, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=36.9047619047619, Blast_Score=132, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=35.9375, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=35.4838709677419, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=34.4827586206897, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=33.7209302325581, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=33.1983805668016, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=33.6032388663968, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=30.9917355371901, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=33.976833976834, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=32.5670498084291, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.4176245210728, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=33.0798479087452, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.4528301886792, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=34.3096234309623, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=31.2977099236641, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=32.8358208955224, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.9230769230769, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=31.6981132075472, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=29.7709923664122, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=30.6122448979592, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=203, Percent_Identity=32.0197044334975, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=28.740157480315, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=29.296875, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=34.6341463414634, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=32.4427480916031, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=27.2, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=246, Percent_Identity=29.2682926829268, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=199, Percent_Identity=30.1507537688442, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=249, Percent_Identity=30.1204819277108, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=194, Percent_Identity=29.3814432989691, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=235, Percent_Identity=28.936170212766, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=213, Percent_Identity=31.924882629108, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI86565303, Length=264, Percent_Identity=27.6515151515151, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=30.0395256916996, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=31.0880829015544, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=234, Percent_Identity=31.6239316239316, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=36.9047619047619, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=38.5214007782101, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=35.8565737051793, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=37.6984126984127, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24644337, Length=199, Percent_Identity=37.6884422110553, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=33.201581027668, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=32.421875, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17737361, Length=232, Percent_Identity=30.6034482758621, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640492, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=30.6532663316583, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641388, Length=204, Percent_Identity=34.8039215686275, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584752, Length=196, Percent_Identity=31.1224489795918, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357673, Length=203, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=31.1557788944724, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648693, Length=211, Percent_Identity=30.8056872037915, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21355889, Length=211, Percent_Identity=30.8056872037915, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648944, Length=238, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45554248, Length=248, Percent_Identity=29.8387096774194, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24640117, Length=248, Percent_Identity=29.8387096774194, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25878; Mature: 25746

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTAPSDRKVVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAQLTAQAVRDAGGRAC
CCCCCCCEEEEEECCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
IVAGDVANETDVVAMFDTVAAEFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLG
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCHHHH
AYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKEL
HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHC
GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS
CCCCEEEEEECCCEEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
YTTGALLDVGGGR
CCCCEEEECCCCC
>Mature Secondary Structure 
TAPSDRKVVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAQLTAQAVRDAGGRAC
CCCCCCEEEEEECCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
IVAGDVANETDVVAMFDTVAAEFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLG
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCHHHH
AYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKEL
HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHC
GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAQEIAEAIVWLLGDAAS
CCCCEEEEEECCCEEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
YTTGALLDVGGGR
CCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]