| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690295
Identifier: 116690295
GI number: 116690295
Start: 2527856
End: 2528437
Strand: Direct
Name: 116690295
Synonym: Bcen2424_2274
Alternate gene names: NA
Gene position: 2527856-2528437 (Clockwise)
Preceding gene: 116690294
Following gene: 116690296
Centisome position: 72.56
GC content: 67.7
Gene sequence:
>582_bases ATGAAGGCAGTCTGCGTTTACTGCGGCTCGTCGTCCGGCGTGCGGCCCGTCTATGCCGACGCCGCGCGCGCGTTCGGCCG TGCACTCGTCGATGCGGGCCTCACGCTCGTGTACGGCGGCGGCCGCGTCGGCCTGATGGGCGTGATCGCCGACGAAGTGA TGGCGGCCGGCGGCCGTGCGGTCGGCGTGATCCCCGAGCTGCTCGTCGACAAGGAAGTCGGCCATACGGGGCTGTCGGAA CTGCACGTCGTGCCCGACATGCACCATCGCAAGAAAATGATGGCCGACCTCTCCGACGCGTTCGTCGCGATGCCCGGCGG CGCCGGCACGCTCGAGGAGCTCTTCGAGGTCTACACGTGGGCGCAGCTCGGCTATCACCGCAAGCCCGTCGCGCTCTACA ACATCGATTCGTTCTACGATCCGCTGATCGCGCTGCTGCGCCATACGGTCGACGAAGGCTTCATGCGACCTGCCTATTTC GACGCGCTGTGCGTCGAATCGGAACCCGTCGCGCTGATCGAGCGGCTGCGCCACTACCAGCCGCCCGCCCGCGACAAGTG GGCGCCCGACGCAGCGAAGTGA
Upstream 100 bases:
>100_bases AGCGCCAGTTCACCGACTACCTGCCGCCGCGCGACGGCTCCCCGCGCCCCGCCGACAGCCCCGTCGTCACCGGGCAGGCG TCCGCCAAGGATTCCAAGCA
Downstream 100 bases:
>100_bases TCCTCACCGGAAACCGCACGCGATGACCGCACCGTCCGACCGCAAGGTAGTCCTCATCACCGGCGCGAGCCGCGGCATCG GCCGCGCGACCGCCGTGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 193
Protein sequence:
>193_residues MKAVCVYCGSSSGVRPVYADAARAFGRALVDAGLTLVYGGGRVGLMGVIADEVMAAGGRAVGVIPELLVDKEVGHTGLSE LHVVPDMHHRKKMMADLSDAFVAMPGGAGTLEELFEVYTWAQLGYHRKPVALYNIDSFYDPLIALLRHTVDEGFMRPAYF DALCVESEPVALIERLRHYQPPARDKWAPDAAK
Sequences:
>Translated_193_residues MKAVCVYCGSSSGVRPVYADAARAFGRALVDAGLTLVYGGGRVGLMGVIADEVMAAGGRAVGVIPELLVDKEVGHTGLSE LHVVPDMHHRKKMMADLSDAFVAMPGGAGTLEELFEVYTWAQLGYHRKPVALYNIDSFYDPLIALLRHTVDEGFMRPAYF DALCVESEPVALIERLRHYQPPARDKWAPDAAK >Mature_193_residues MKAVCVYCGSSSGVRPVYADAARAFGRALVDAGLTLVYGGGRVGLMGVIADEVMAAGGRAVGVIPELLVDKEVGHTGLSE LHVVPDMHHRKKMMADLSDAFVAMPGGAGTLEELFEVYTWAQLGYHRKPVALYNIDSFYDPLIALLRHTVDEGFMRPAYF DALCVESEPVALIERLRHYQPPARDKWAPDAAK
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LOG family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322406, Length=207, Percent_Identity=42.9951690821256, Blast_Score=170, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005269 [H]
Pfam domain/function: PF03641 Lysine_decarbox [H]
EC number: NA
Molecular weight: Translated: 20961; Mature: 20961
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAVCVYCGSSSGVRPVYADAARAFGRALVDAGLTLVYGGGRVGLMGVIADEVMAAGGRA CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCE VGVIPELLVDKEVGHTGLSELHVVPDMHHRKKMMADLSDAFVAMPGGAGTLEELFEVYTW EHHHHHHHHHHHCCCCCCHHEECCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHH AQLGYHRKPVALYNIDSFYDPLIALLRHTVDEGFMRPAYFDALCVESEPVALIERLRHYQ HHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCC PPARDKWAPDAAK CCCCCCCCCCCCC >Mature Secondary Structure MKAVCVYCGSSSGVRPVYADAARAFGRALVDAGLTLVYGGGRVGLMGVIADEVMAAGGRA CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCE VGVIPELLVDKEVGHTGLSELHVVPDMHHRKKMMADLSDAFVAMPGGAGTLEELFEVYTW EHHHHHHHHHHHCCCCCCHHEECCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHH AQLGYHRKPVALYNIDSFYDPLIALLRHTVDEGFMRPAYFDALCVESEPVALIERLRHYQ HHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCC PPARDKWAPDAAK CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 2116366 [H]