| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690175
Identifier: 116690175
GI number: 116690175
Start: 2394989
End: 2395978
Strand: Reverse
Name: 116690175
Synonym: Bcen2424_2154
Alternate gene names: NA
Gene position: 2395978-2394989 (Counterclockwise)
Preceding gene: 116690176
Following gene: 116690174
Centisome position: 68.77
GC content: 65.56
Gene sequence:
>990_bases ATGCGCACTTTCCTTTCCCTCGGCCGCACGCTCGCGCTGGCCGCCGCCGTCCTGGCGCCCGCCGCCCACGCGAATAACGT GATCGTTCTCAACTCGGCCGAAGCGACGCTTTCCCTGATCGACCAGCAGACCCGCGAAGTCGTTTCCACGATGCCGACCG GCAAGGAACCGCACCATTTGATGGCGACGCCCGACAATGCGTCGCTGATCGTTGCAAATTCGGTCTCGAACAGCCTGATG TTCCTCGATCCGAAGACGGGCAAGCTGCAGCGCACCGTCGAAGGGATCGACGATCCTTACCAGCTCGGTTTCTCGCCCGA CCGCAAGTGGTTCGCGGCGGCCGGCCTGCGGCTCGACCGCGTCGACATCTACGGCTACGACGGCCGCGACCTGAAGCTCG TGAAGCGCGTGCCGCTCGCGGTGATGCCGAGCCACCTCGCGTTCACGAAGGACAGCAAGACGCTGCTCGTGTCGCTGCAG GTGTCCGGCGAGATCGCGGCGATCGACCTGCCCACGCAGACGGTCAAATGGAAGATGAAGGTCGGCAAGGTGCCGGCCGG CCTGTGGCTCACGCCGGACGACAAGTTCCTGCTCGTCGGGATGACCGGCGCGGATTACGTCGCGGTCGTCGACTGGCGCA ACCAGAAGGTCGTCAAGCAGATCTACACGGGCAAGGGCGCGCACAACTTCCGCTCGCTCGCCGACGGCACGCACGTCGCG GTGACGAACCGCGTCGCGAACACGATCAGCATCATCGACGAGAACACGCTCACCAACGTCGGCGACATCACGGGCCTGTT GCCGGGCCCCGACGACATGGAGCTGTCCGCCGACAAGAAGACGCTGTGGGTGACGTTCCGTTTCGCGAAGAAGGTCGGGA TCATCGACCTGGCCTCGCGCAAGCTGGTGCAGACGATCGCCGTCGGCCGCTCGCCGCACGGCATCTACTTCTACGACCGC GCGCCGTGGAGAGCGGCGAACGGCGCGTGA
Upstream 100 bases:
>100_bases AGGCGGGGCGTGCGTCGAAGCGGCGCAATGCCGGCCTGGGTCAACCGGCGGGGCCCGCCGAACGTTCTACAATGACTGCT GTTCCACGACGTGAGTCTTC
Downstream 100 bases:
>100_bases CGGGCGGAGGCGAACGATGCTGCACCTGATCGATGCGTTCGTGTCGGACATCCAGACCTGGCTGTACGTCGACGTCGTGC AGCCGCTCCTCTTCAAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Surface Layer Protein; Cell Surface Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; YVTN Family Beta-Propeller Repeat Protein; Cytochrome D1 Heme Region; Beta-Propeller Repeat-Containing Protein; Yvtn Beta-Propeller Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; Signal Peptide Protein; Beta-Propeller Fold Protein; Signal Peptide; Yvtn Beta-Propeller Repeat Family Protein; WD40 Domain-Containing Protein; Outer Membrane Protein; YVTN Beta-Propeller Repeat Family Protein; PGRS-Subfamily Gly-Rich Protein; Cytochrome D1 Heme Subunit; IPT/TIG Domain Protein; Serine/Threonine Protein Kinase; YVTN Family Beta-Propeller Repeat-Containing Protein; Vegetative Incompatibility; Surface Antigen-Like Protein; Surface Antigen; Secreted Protein; Lipoprotein; Exported Protein; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MRTFLSLGRTLALAAAVLAPAAHANNVIVLNSAEATLSLIDQQTREVVSTMPTGKEPHHLMATPDNASLIVANSVSNSLM FLDPKTGKLQRTVEGIDDPYQLGFSPDRKWFAAAGLRLDRVDIYGYDGRDLKLVKRVPLAVMPSHLAFTKDSKTLLVSLQ VSGEIAAIDLPTQTVKWKMKVGKVPAGLWLTPDDKFLLVGMTGADYVAVVDWRNQKVVKQIYTGKGAHNFRSLADGTHVA VTNRVANTISIIDENTLTNVGDITGLLPGPDDMELSADKKTLWVTFRFAKKVGIIDLASRKLVQTIAVGRSPHGIYFYDR APWRAANGA
Sequences:
>Translated_329_residues MRTFLSLGRTLALAAAVLAPAAHANNVIVLNSAEATLSLIDQQTREVVSTMPTGKEPHHLMATPDNASLIVANSVSNSLM FLDPKTGKLQRTVEGIDDPYQLGFSPDRKWFAAAGLRLDRVDIYGYDGRDLKLVKRVPLAVMPSHLAFTKDSKTLLVSLQ VSGEIAAIDLPTQTVKWKMKVGKVPAGLWLTPDDKFLLVGMTGADYVAVVDWRNQKVVKQIYTGKGAHNFRSLADGTHVA VTNRVANTISIIDENTLTNVGDITGLLPGPDDMELSADKKTLWVTFRFAKKVGIIDLASRKLVQTIAVGRSPHGIYFYDR APWRAANGA >Mature_329_residues MRTFLSLGRTLALAAAVLAPAAHANNVIVLNSAEATLSLIDQQTREVVSTMPTGKEPHHLMATPDNASLIVANSVSNSLM FLDPKTGKLQRTVEGIDDPYQLGFSPDRKWFAAAGLRLDRVDIYGYDGRDLKLVKRVPLAVMPSHLAFTKDSKTLLVSLQ VSGEIAAIDLPTQTVKWKMKVGKVPAGLWLTPDDKFLLVGMTGADYVAVVDWRNQKVVKQIYTGKGAHNFRSLADGTHVA VTNRVANTISIIDENTLTNVGDITGLLPGPDDMELSADKKTLWVTFRFAKKVGIIDLASRKLVQTIAVGRSPHGIYFYDR APWRAANGA
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35815; Mature: 35815
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFLSLGRTLALAAAVLAPAAHANNVIVLNSAEATLSLIDQQTREVVSTMPTGKEPHHL CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEE MATPDNASLIVANSVSNSLMFLDPKTGKLQRTVEGIDDPYQLGFSPDRKWFAAAGLRLDR EECCCCCEEEEEECCCCCEEEECCCCCHHHHHHHCCCCHHHCCCCCCCCCHHHCCCEEEE VDIYGYDGRDLKLVKRVPLAVMPSHLAFTKDSKTLLVSLQVSGEIAAIDLPTQTVKWKMK EEEEECCCCCEEEEECCCCEECCCCEEEECCCCEEEEEEEECCEEEEEECCCCEEEEEEE VGKVPAGLWLTPDDKFLLVGMTGADYVAVVDWRNQKVVKQIYTGKGAHNFRSLADGTHVA ECCCCCCCEECCCCCEEEEEECCCCEEEEEECCCHHHHHHHHCCCCCCHHHHHCCCCEEE VTNRVANTISIIDENTLTNVGDITGLLPGPDDMELSADKKTLWVTFRFAKKVGIIDLASR EEHHHHHEEEEEECCCCCCCCHHEECCCCCCCCEECCCCEEEEEEEEECCCCCEEEHHHH KLVQTIAVGRSPHGIYFYDRAPWRAANGA HHHHHHHCCCCCCCEEEEECCCCCCCCCC >Mature Secondary Structure MRTFLSLGRTLALAAAVLAPAAHANNVIVLNSAEATLSLIDQQTREVVSTMPTGKEPHHL CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEE MATPDNASLIVANSVSNSLMFLDPKTGKLQRTVEGIDDPYQLGFSPDRKWFAAAGLRLDR EECCCCCEEEEEECCCCCEEEECCCCCHHHHHHHCCCCHHHCCCCCCCCCHHHCCCEEEE VDIYGYDGRDLKLVKRVPLAVMPSHLAFTKDSKTLLVSLQVSGEIAAIDLPTQTVKWKMK EEEEECCCCCEEEEECCCCEECCCCEEEECCCCEEEEEEEECCEEEEEECCCCEEEEEEE VGKVPAGLWLTPDDKFLLVGMTGADYVAVVDWRNQKVVKQIYTGKGAHNFRSLADGTHVA ECCCCCCCEECCCCCEEEEEECCCCEEEEEECCCHHHHHHHHCCCCCCHHHHHCCCCEEE VTNRVANTISIIDENTLTNVGDITGLLPGPDDMELSADKKTLWVTFRFAKKVGIIDLASR EEHHHHHEEEEEECCCCCCCCHHEECCCCCCCCEECCCCEEEEEEEEECCCCCEEEHHHH KLVQTIAVGRSPHGIYFYDRAPWRAANGA HHHHHHHCCCCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA