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The map label for this gene is yciO [H]

Identifier: 116690120

GI number: 116690120

Start: 2330333

End: 2330965

Strand: Reverse

Name: yciO [H]

Synonym: Bcen2424_2099

Alternate gene names: 116690120

Gene position: 2330965-2330333 (Counterclockwise)

Preceding gene: 116690121

Following gene: 116690119

Centisome position: 66.91

GC content: 67.3

Gene sequence:

>633_bases
ATGTCCCAGTTCTTCAGGATTCATCCGGATAATCCGCAGCCGCGCCTGATCAAGCAGGCGGTGGAGATCGTCAGCAAGGG
CGGCGTGATCGCGATGCCGACCGATTCGAGCTATGCGCTCGCGTGCCATCTCGACGACAAGGATGCGGTCGAGCGCGTGC
GGCGGATTCGCGGCCTCGACGAGAAGCAGCACCTGTCGCTGCTCGTGCGCGACCTGTCGGAGCTCGCCAACTTCGCGATG
GTCGACAACCGCCAGTACCGGCAGATCAAGTCGGTGACGCCGGGCCCGTACGTGTTCATCCTGCAGGCGACGAAGGAAGT
GCCGCGCCGGCTGTCGCACCCGTCGCGCAAGACGATCGGGCTGCGCGTGCCGGATCACGCGATCACGCTCGCGCTGCTGG
AGTCGCTCGGCCAGCCGCTGCTCGGCACGACGCTGATCCTGCCGCCGGACGACGAACCGCTGAACGATCCCGAGGAAATC
CGCACGCGGCTCGAGAAACAGGTCGACCTCGTGATCGACGGCGGCGCGTGCCCGCGCGAACCGTCGACGGTGATCGACCT
GACCGGCGATGCGCCCGAACTCATCCGTGCGGGGCGCGGCGCGCTCGAACCGTTCGGACTCTCGGCCGCATGA

Upstream 100 bases:

>100_bases
CTGACGCCGGTCTGGGAGCGCTGGCTCTGACGCCGGGCGGCTTCGGCCCGCCCGCGTTGCCGTTGATGCGCATCCGACTT
CTCCCTCTTTACGTGTCCCC

Downstream 100 bases:

>100_bases
CCCGCGGTGTCATTTTTGCGCGAGTGCGCTTGTTACAATAACGCGATATGGATGCTTCCCTGATACAGACCATCGCCGTC
TACGCGCTGCCCGTGATCTT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELANFAM
VDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNDPEEI
RTRLEKQVDLVIDGGACPREPSTVIDLTGDAPELIRAGRGALEPFGLSAA

Sequences:

>Translated_210_residues
MSQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELANFAM
VDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNDPEEI
RTRLEKQVDLVIDGGACPREPSTVIDLTGDAPELIRAGRGALEPFGLSAA
>Mature_209_residues
SQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELANFAMV
DNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNDPEEIR
TRLEKQVDLVIDGGACPREPSTVIDLTGDAPELIRAGRGALEPFGLSAA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=59.0243902439024, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI2367210, Length=193, Percent_Identity=27.979274611399, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI78707274, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23206; Mature: 23075

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLD
CCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQHLSLLVRDLSELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGGACPRE
EECCHHHHHHHHHHHHCCCHHCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PSTVIDLTGDAPELIRAGRGALEPFGLSAA
CCEEEEECCCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLD
CCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQHLSLLVRDLSELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGGACPRE
EECCHHHHHHHHHHHHCCCHHCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PSTVIDLTGDAPELIRAGRGALEPFGLSAA
CCEEEEECCCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]