| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yejA [C]
Identifier: 116690083
GI number: 116690083
Start: 2289343
End: 2291217
Strand: Reverse
Name: yejA [C]
Synonym: Bcen2424_2062
Alternate gene names: 116690083
Gene position: 2291217-2289343 (Counterclockwise)
Preceding gene: 116690084
Following gene: 116690082
Centisome position: 65.77
GC content: 67.89
Gene sequence:
>1875_bases ATGACGAAGGGTTCGCCCCGGGCCGCCGCCGCGCGTGCCTGCCTTGGCGCGCTGCGGGCCGCCGGCCGCGTGGCCGCGGT GCTGGCGCTGCATGCGGTGCTGGCCGCGCCGGCCGCGCAGGCGGCCTACGCCATCGCGCAGTACGGCGAGCCGAAGTATC CGCCGGGCTTCAAGCATTTCGACTACGTGAACCCCGACGCGCCGAAGGGCGGCACGCTCGTGCTCGCGAATCCGAGCCGA CTGACGTCGTTCGACAAGTTCAATCCGTTCACGATGCGCGGCAACACCGCGCCCGGCATCGACATGCTGTTCGAGAGCCT CGCGACCGGCAGCTCCGACGAACCGGCTTCCGCCTACGGGCTGCTGGCCGACGACATCGACGTCGCCCCGGACCGCCGTT CGGTCACGTTCCACCTGAATCCGCGCGCACGCTTTTCGAACGGCGATCGCGTCACGGCCGACGACGTCAAGTTTTCGTTC GATACGCTCAAGAGCAAGCAGGCCGCACCGCAGTTCGGCGCATATTTCGCGGAAATCGCGAAGGCCGTGGTCGTCGATCC GGCGACCGTGCGCTTCGAGTTCCGTAGCGCGAACCGCGAACTGCCGCTGATCGCCGGCGGCGTGCCCGTGTTTTCGCGCA AGTGGGGATTGCGCGCGGACGGCTCGCGCATCCCGTTCGACCAGCTTGCGTTCGAGCAGCCGATCGGCAGCGGCCCGTAC GTGATCGAGCGCTACGACAACGGCCGCACGATCACCTACCGGCGCAACCCCGCGTACTGGGGCGCCGACCTGCCGGTACG AGTCGGCACCAACAACTTCGAGCGGATCGTGTACAAGCTGTACGGCGACGGCGTCGCGCGGCTCGAGGCGTTCAAGGCCG GCGAGTACGACGTGCTCGTCGAGTACATCGCACGCAACTGGACGCGGCGCGACGTCGGCAAGCGTTTCGACAGCGGCGAG CTCGTCAAGCGCGAATTCCGCCAGCATAACGGCGCCGGCATGCAAGGCTTTTTCGTGAACCTGCGCCGGCCGCTGTTCCG CGACGTGCGCGTGCGCCAGGCGCTCGACCTGGCGTTCGACTTCGAGTGGCTGAACCGGCAACTGTTCTACAGCGCATACA CGCGTCTCAACAGTTATTTCGCCGACACCGACCTGCAAGCGACTGGTACGCCGAGCGAAGGCGAGCTGAAGCTGCTGGAG CCGCTGCGCGCACAGCTCGATCCGGCCGTGTTCGGCCCGACGGTCACGCAGCCGGACACGAATCCGCCGGGCTCGCTGCG CGCGAACCTGCTGAAGGCGCGCGCCCTGCTCGCGCAGGCCGGCTGGACCTATCGCGACGGCGCGCTGCGCAACGCGAAGG GCGAGCCGTTCGCGTTCGAGATCCTCGACGATGCGGGCGGCGCGATGGAGGGCGTCGTGACCGCCTACCAGCGCAACCTG GCGAAGCTCGGCATCGTCGTGCGGTTTCGCACGGCCGATTACGCGCTGCTGCAAAAGCGCCTCGATGCATTCGACTACGA CATGACGACGATCCGCCTGCCGGGCGTGCAGGTGCCGGGCGCCGAGCAATACTCGCGCTACGCGAGCAAGTTCGCCGACG AGCCGGGCTCCGACAACTTCATCGGATTGAAATCGCCGGCCGTCGACGCGTTGCTGCATGCGCTCGGCGCCGCGCAAACG CGCGAGGAACTGCTCGACGCGACGCACGCGCTCGACCGCGTGCTGATGCACGGCTACTACGCGGTCCCGCAGTGGTACAG CACGACGCACCGCATTGCGTACAAGCGCACGCTCGCCTATCCGCAGACGCTGCCGCTGTACTATTCGGCCGAGGGCTGGG TCGTGTCGACCTGGTGGGCGAAGCCCGATCACTGA
Upstream 100 bases:
>100_bases CGTGAGGAAACCGCCCGCGTGGCGGTTTTCTTTTGGCTCGACGGATTGAATGGGTAGAATCGCTCCACGTTACTACCCTC ATTCGATCGACAGGGCCTCT
Downstream 100 bases:
>100_bases CCCGCGCCGGCCCTTCGTCCAACCCCGCCATCCGATCACGAGTCGACGCCCTATGTGGAGCTACATCCTCAAACGCCTGC TGCTGATGATCCCGACGCTC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 624; Mature: 623
Protein sequence:
>624_residues MTKGSPRAAAARACLGALRAAGRVAAVLALHAVLAAPAAQAAYAIAQYGEPKYPPGFKHFDYVNPDAPKGGTLVLANPSR LTSFDKFNPFTMRGNTAPGIDMLFESLATGSSDEPASAYGLLADDIDVAPDRRSVTFHLNPRARFSNGDRVTADDVKFSF DTLKSKQAAPQFGAYFAEIAKAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPY VIERYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWTRRDVGKRFDSGE LVKREFRQHNGAGMQGFFVNLRRPLFRDVRVRQALDLAFDFEWLNRQLFYSAYTRLNSYFADTDLQATGTPSEGELKLLE PLRAQLDPAVFGPTVTQPDTNPPGSLRANLLKARALLAQAGWTYRDGALRNAKGEPFAFEILDDAGGAMEGVVTAYQRNL AKLGIVVRFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFIGLKSPAVDALLHALGAAQT REELLDATHALDRVLMHGYYAVPQWYSTTHRIAYKRTLAYPQTLPLYYSAEGWVVSTWWAKPDH
Sequences:
>Translated_624_residues MTKGSPRAAAARACLGALRAAGRVAAVLALHAVLAAPAAQAAYAIAQYGEPKYPPGFKHFDYVNPDAPKGGTLVLANPSR LTSFDKFNPFTMRGNTAPGIDMLFESLATGSSDEPASAYGLLADDIDVAPDRRSVTFHLNPRARFSNGDRVTADDVKFSF DTLKSKQAAPQFGAYFAEIAKAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPY VIERYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWTRRDVGKRFDSGE LVKREFRQHNGAGMQGFFVNLRRPLFRDVRVRQALDLAFDFEWLNRQLFYSAYTRLNSYFADTDLQATGTPSEGELKLLE PLRAQLDPAVFGPTVTQPDTNPPGSLRANLLKARALLAQAGWTYRDGALRNAKGEPFAFEILDDAGGAMEGVVTAYQRNL AKLGIVVRFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFIGLKSPAVDALLHALGAAQT REELLDATHALDRVLMHGYYAVPQWYSTTHRIAYKRTLAYPQTLPLYYSAEGWVVSTWWAKPDH >Mature_623_residues TKGSPRAAAARACLGALRAAGRVAAVLALHAVLAAPAAQAAYAIAQYGEPKYPPGFKHFDYVNPDAPKGGTLVLANPSRL TSFDKFNPFTMRGNTAPGIDMLFESLATGSSDEPASAYGLLADDIDVAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFD TLKSKQAAPQFGAYFAEIAKAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPYV IERYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWTRRDVGKRFDSGEL VKREFRQHNGAGMQGFFVNLRRPLFRDVRVRQALDLAFDFEWLNRQLFYSAYTRLNSYFADTDLQATGTPSEGELKLLEP LRAQLDPAVFGPTVTQPDTNPPGSLRANLLKARALLAQAGWTYRDGALRNAKGEPFAFEILDDAGGAMEGVVTAYQRNLA KLGIVVRFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFIGLKSPAVDALLHALGAAQTR EELLDATHALDRVLMHGYYAVPQWYSTTHRIAYKRTLAYPQTLPLYYSAEGWVVSTWWAKPDH
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=589, Percent_Identity=38.0305602716469, Blast_Score=369, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 69165; Mature: 69034
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: PS01310 FXYD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKGSPRAAAARACLGALRAAGRVAAVLALHAVLAAPAAQAAYAIAQYGEPKYPPGFKHF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC DYVNPDAPKGGTLVLANPSRLTSFDKFNPFTMRGNTAPGIDMLFESLATGSSDEPASAYG CCCCCCCCCCCEEEEECCHHHCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHC LLADDIDVAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFDTLKSKQAAPQFGAYFAEIA EEECCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEHHHHHHHHCCCCHHHHHHHHHH KAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPY HHHEECCCEEEEEEECCCCCCCEEECCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCE VIERYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLV EEEEECCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHH EYIARNWTRRDVGKRFDSGELVKREFRQHNGAGMQGFFVNLRRPLFRDVRVRQALDLAFD HHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FEWLNRQLFYSAYTRLNSYFADTDLQATGTPSEGELKLLEPLRAQLDPAVFGPTVTQPDT HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCC NPPGSLRANLLKARALLAQAGWTYRDGALRNAKGEPFAFEILDDAGGAMEGVVTAYQRNL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH AKLGIVVRFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNF HHEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCE IGLKSPAVDALLHALGAAQTREELLDATHALDRVLMHGYYAVPQWYSTTHRIAYKRTLAY EECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCCHHCHHHHHHHHHHHCC PQTLPLYYSAEGWVVSTWWAKPDH CCCCCEEECCCCCEEEEECCCCCC >Mature Secondary Structure TKGSPRAAAARACLGALRAAGRVAAVLALHAVLAAPAAQAAYAIAQYGEPKYPPGFKHF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC DYVNPDAPKGGTLVLANPSRLTSFDKFNPFTMRGNTAPGIDMLFESLATGSSDEPASAYG CCCCCCCCCCCEEEEECCHHHCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHC LLADDIDVAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFDTLKSKQAAPQFGAYFAEIA EEECCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEHHHHHHHHCCCCHHHHHHHHHH KAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPY HHHEECCCEEEEEEECCCCCCCEEECCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCE VIERYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLV EEEEECCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHH EYIARNWTRRDVGKRFDSGELVKREFRQHNGAGMQGFFVNLRRPLFRDVRVRQALDLAFD HHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FEWLNRQLFYSAYTRLNSYFADTDLQATGTPSEGELKLLEPLRAQLDPAVFGPTVTQPDT HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCC NPPGSLRANLLKARALLAQAGWTYRDGALRNAKGEPFAFEILDDAGGAMEGVVTAYQRNL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH AKLGIVVRFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNF HHEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCE IGLKSPAVDALLHALGAAQTREELLDATHALDRVLMHGYYAVPQWYSTTHRIAYKRTLAY EECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCCHHCHHHHHHHHHHHCC PQTLPLYYSAEGWVVSTWWAKPDH CCCCCEEECCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA