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The map label for this gene is rnhB [H]

Identifier: 116690026

GI number: 116690026

Start: 2221503

End: 2222147

Strand: Reverse

Name: rnhB [H]

Synonym: Bcen2424_2005

Alternate gene names: 116690026

Gene position: 2222147-2221503 (Counterclockwise)

Preceding gene: 116690027

Following gene: 116690025

Centisome position: 63.78

GC content: 67.44

Gene sequence:

>645_bases
ATGACCGCAATCCGTGCGCCACGCCGCCGTGCGTCGAGCGACGTGCAGGGCGGTTTCGACTTCAGCCGTCCGGACGAGAT
CGTCTGCGGCGTCGACGAAGCCGGCCGCGGCCCGCTCGCGGGGCCGGTAGTCGCCGCCGCGGTGATCCTCGATCCGGCAC
AGCCGATCGACGGGCTCGACGATTCGAAAGTGCTGTCCGCGAAGAAGCGCGACGCGCTGTACGACCTGATCGTCACGCGT
TCGCACGCGTATTGCGTCGCGTCGGCGAGTGTCGACGAGATCGATACGCTGAATATCCTGCATGCGACGATGCTCGCGAT
GAAGCGGGCCGTCGAAGGCCTGTCGGTACTGCCGACGCTCGCGCAGATCGACGGCAACCGCTGCCCGACGCTGAGCGTGC
GTGCCGAGGCGATCGTCAGTGGCGACGCGCTCGTGCCGAGCATCTCGGCCGCGTCGATCCTAGCGAAGGTCACGCGCGAC
CGGATGCTGGTCGACCTGCATGAACGCTTCCCGGTGTACGGTTTCAACGTGCATGCGGGCTACGGCACCGCGAAACACCT
TGCCGCACTTCGCGAGCACGGCCCGTGCGAAGCGCATCGGCGCTCGTTCGCGCCGGTTCGCGCGGCGCTTGACCTGATTC
GATGA

Upstream 100 bases:

>100_bases
CCGAAGTGTTTACCGAAATGCATCTGTCGCTGCGGCAGAACACGGCCGCGAAGGCGGCCGAGGCCGTCGTGCGCGTGCTC
GAACAACGCAAGGGGCGCGC

Downstream 100 bases:

>100_bases
AAAGCATCACTTCCCGCGACAATCCGCTGTACAAGCGCCTGAAGGCGCTCGCGGGTTCGACGCCCCATCAGCGCCGCAGC
GGCCAGGCGCTGCTCGAAGG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTAIRAPRRRASSDVQGGFDFSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTR
SHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRD
RMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPVRAALDLIR

Sequences:

>Translated_214_residues
MTAIRAPRRRASSDVQGGFDFSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTR
SHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRD
RMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPVRAALDLIR
>Mature_213_residues
TAIRAPRRRASSDVQGGFDFSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRS
HAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDR
MLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPVRAALDLIR

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=195, Percent_Identity=58.974358974359, Blast_Score=214, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22827; Mature: 22696

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIRAPRRRASSDVQGGFDFSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLD
CCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
DSKVLSAKKRDALYDLIVTRSHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTL
CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG
HHCCCCCCCEEEEEHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
YGTAKHLAALREHGPCEAHRRSFAPVRAALDLIR
CCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
TAIRAPRRRASSDVQGGFDFSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLD
CCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
DSKVLSAKKRDALYDLIVTRSHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTL
CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG
HHCCCCCCCEEEEEHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
YGTAKHLAALREHGPCEAHRRSFAPVRAALDLIR
CCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA