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The map label for this gene is rpoE [H]

Identifier: 116689897

GI number: 116689897

Start: 2081107

End: 2081742

Strand: Reverse

Name: rpoE [H]

Synonym: Bcen2424_1876

Alternate gene names: 116689897

Gene position: 2081742-2081107 (Counterclockwise)

Preceding gene: 116689898

Following gene: 116689896

Centisome position: 59.75

GC content: 72.96

Gene sequence:

>636_bases
GTGGGGCAAGCCGGACAGGCGGTCGATGAACGGGCGGCGGACGATGCGCTCGCGCGCGGCGAGCGGTTTCGCGCGCTCGT
GCTGCCGCATCTCGACGCCGCCTACAACCTCGCGCGCTGGCTGAGCGGCAGCGCCGGCGATGCGGACGACGTCGTCCAGG
ACGCGTGCATGCGAGCGCTGCGCTTCGTCGATTCGTGTCGCGGCGACAACGCGCGGCCGTGGCTGCTGACGATCGTGCGC
CACACCTGGTACACCGAATGGCGGCGGCGCACGCATGCGCACGAGGTCGCGCTGCCCGACACGCTCGACGATGCCGACGT
CCCGGACGACTGGCAGCCGGCGACGGAGGACCCGCTCGCGCACCTGCTTCGCGGCGAGAACGTGCGGCTCGTGAATGCGG
CGCTCGCGAAGCTGCCGCCCGAATACCGCGAGGTGCTCGTGCTGCGCGAGATGGAGGACCTGAGCTACCGCGAGATCGCG
GCGATCGCGGACGTGCCGGTCGGCACGGTGATGTCGCGGCTCGCGCGCGGCCGGCGCAAGCTTGCCGCGCTGCTGGGCGG
CGTGCCGGCGACCGAAGGCCGGCCGGGCCGAGCGCCGGCGGGCGGAACCGCATCGGAGGCTATCGATGGACTGTAA

Upstream 100 bases:

>100_bases
CGCAGCGGCGGTAAGGTCATCGAGCGCGCACGTTGCCGGTCTGTCCGGGCGCCGTGCGCGGAACGGGCGCGGCGTCGGCC
GCCGGGACCAGGGAGGCCAT

Downstream 100 bases:

>100_bases
CGAAGCGCGAGCGTTGCTGGACGCGGACGTCGACCGCGAGCTGTCGGCGCCCGATGCGTTGCGGGTCCAGCAGCATGTCG
AAGGGTGCGACGCGTGCCGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MGQAGQAVDERAADDALARGERFRALVLPHLDAAYNLARWLSGSAGDADDVVQDACMRALRFVDSCRGDNARPWLLTIVR
HTWYTEWRRRTHAHEVALPDTLDDADVPDDWQPATEDPLAHLLRGENVRLVNAALAKLPPEYREVLVLREMEDLSYREIA
AIADVPVGTVMSRLARGRRKLAALLGGVPATEGRPGRAPAGGTASEAIDGL

Sequences:

>Translated_211_residues
MGQAGQAVDERAADDALARGERFRALVLPHLDAAYNLARWLSGSAGDADDVVQDACMRALRFVDSCRGDNARPWLLTIVR
HTWYTEWRRRTHAHEVALPDTLDDADVPDDWQPATEDPLAHLLRGENVRLVNAALAKLPPEYREVLVLREMEDLSYREIA
AIADVPVGTVMSRLARGRRKLAALLGGVPATEGRPGRAPAGGTASEAIDGL
>Mature_210_residues
GQAGQAVDERAADDALARGERFRALVLPHLDAAYNLARWLSGSAGDADDVVQDACMRALRFVDSCRGDNARPWLLTIVRH
TWYTEWRRRTHAHEVALPDTLDDADVPDDWQPATEDPLAHLLRGENVRLVNAALAKLPPEYREVLVLREMEDLSYREIAA
IADVPVGTVMSRLARGRRKLAALLGGVPATEGRPGRAPAGGTASEAIDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=143, Percent_Identity=36.3636363636364, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23062; Mature: 22931

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQAGQAVDERAADDALARGERFRALVLPHLDAAYNLARWLSGSAGDADDVVQDACMRAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFVDSCRGDNARPWLLTIVRHTWYTEWRRRTHAHEVALPDTLDDADVPDDWQPATEDPLA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
HLLRGENVRLVNAALAKLPPEYREVLVLREMEDLSYREIAAIADVPVGTVMSRLARGRRK
HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
LAALLGGVPATEGRPGRAPAGGTASEAIDGL
HHHHHCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GQAGQAVDERAADDALARGERFRALVLPHLDAAYNLARWLSGSAGDADDVVQDACMRAL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFVDSCRGDNARPWLLTIVRHTWYTEWRRRTHAHEVALPDTLDDADVPDDWQPATEDPLA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
HLLRGENVRLVNAALAKLPPEYREVLVLREMEDLSYREIAAIADVPVGTVMSRLARGRRK
HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
LAALLGGVPATEGRPGRAPAGGTASEAIDGL
HHHHHCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]