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The map label for this gene is pupB [H]

Identifier: 116689383

GI number: 116689383

Start: 1498550

End: 1501117

Strand: Direct

Name: pupB [H]

Synonym: Bcen2424_1361

Alternate gene names: 116689383

Gene position: 1498550-1501117 (Clockwise)

Preceding gene: 116689382

Following gene: 116689384

Centisome position: 43.01

GC content: 68.77

Gene sequence:

>2568_bases
ATGGGTAATGAAAGCAGCCCTAGCCCATCGTCCACCGACTCTCCGATCATGGCTTCCATCCGTCTCACGTATCAGCGCCG
TCCGGCGCCCGCCCGTCATCTGCCGCGCGCGTCGCGCCCGGCCGCGTCGGGCCGTCTTGCCCGCCGGCTGGCGGGTGCCG
TCCTGCTGTCGGCACTGCTGCCGCTGCCCGCGCTGGCCGACACCGACGCCGATGCGGCGCCCGCCACGCAGCGCGCGTCG
CGTCGGGCGTTCGACATTCCGGCCGGCCCGCTCGAAGCGGCGCTGAACCGGTTCGGCCGCGACGCGGGCATCCTGCTCGC
ATTTCCGCCCGAGTTGACGGCCGGTCTCGCGAGCGGCGGCGTGCACGGCCGGTTCGACGTCGACGGCGCGTTCGACCGCC
TGCTGGCCGGCACGGGGCTCGTCGCGCTGCGCCAGCCGGGCGGTGGCTACACGCTGATGCGCGCCGATGGCTCGGCGGCC
GGCCCTGTGGCGGCCGGCGTCGCGCCAGCCGCCGAGTTGCCGACGATCGACGTGCGCTCCAGCGCCTTGCGCGCCGAAAG
CTATCGCGCGCCGAAGGAAGCGGGCGTGCTGCGCTCCGACATTCCGCTGCTCGACACCGCGCAGGCCGTCAACATCGTGC
CCGCGCAGGTGCTGCGCGACCAGCGGCCGCGCAATCTCGACGATGCGCTCGGCAACGTGAGCGGCATCACGCAGGGCAAC
ACGCTCGCGGGCACGCAGGACACGATCATGAAGCGCGGCTTCGGCGGCAACCGCGACGGCTCGATCATGCAGAACGGCAT
GCCGCTCGTGCAGGGCCGCGCGTTCAACGCGGCGACCGACAGCGTCGAGGTGCTGAAGGGGCCGACGTCGTTGCTGTACG
GGCTGATGGACCCGGGCGGCGTCGTCAACGTCGTCACCAAGCAGCCGCAGCTCGTGCGCTACAACGTGATCTCGCTCGGC
GCGTCGACGTTCGGGCACGGCAAGAACGGCGGCAGCGCGACGTTCGACTCGACCGGGCCGGTCGGCGATTCGCGGCTCGC
GTACCGGCTGATCGTCGACCAGTCGAACGAACAGTACTGGCGCAACTTCGGCGAGTACCGGCAGACCTTCGTCGCGCCGT
CGCTCGCGTGGTACGGCCGCGATACGCAGGTCGCGGTGTCGTACCAGTACCGCAAGTTCCATTCGCCGTTCGATCGCGGC
ACCGCGCTCGACCCGCGCACCAATGCGCCGCTCGACATCCCCGCACGGCGGCGCATCGACGAGCCGTTCAACAACATGGA
CGGCGAATCGCAGCTCGCGCAACTGAGCGTCGATCACCAGTTCAACGCGGACTGGAGCGCGCATTTCGGCTACAGCTACA
ACCGCGAGACCTACGACGCGAACCAGTTGCGCACGACCGGCGTCGACCCTGTGAAGGGCACGATGACGCGCAGCAACGAT
GCGACGCACGGCTCGCTCAGCACCGACAGCTACGGGATCGGCTACGTGACCGGCAAGCTGACGCTCGCGGGGATGCGGCA
CGACGTGCAGGTCGGCTTCGATACCGAATACCGCCGCATCTATCGCAAGGACCTGCTGCGTCAGGCGGTGAAGACGCCGT
TCAGTTATATCGATCCGGTGTACGGGCTGCTGCCGCCGTCGAGCACGGTGTCCGCGAGCGACAGCGACCAGACCGACACG
CTGCACGATGCATCCGCGTTCTTCCAGGATACGGTCCACCTGACCGACAAGTGGATCGTGTCGGGCGGCCTCCGCTACAT
CACGTACAACCAGGTGGCGGGGCGCGGCCGGCCGTTCGTCGCGAACACCGATCTCAGCGGCTCGAAGTGGCTGCCGCGCG
CGGGCGTCGTCTACAAGTGGACCGATGCGTTCTCGCTGTACGGCAGCTATTCGCAGTCGCTGAAGCCGTCGTCGTCGATC
GCGCCGATGACGGGCTACATCATCGACGGCGCGACGCCGCCCGAGGAAGCGACCGCATGGGAAGTGGGCGGCAAGCTCGG
CTTGGCCGGCGGGATGACCGGCACGCTCGCGCTGTTCAACATCGACAAGAAGAACGTGCTCGTGTCGCAGTACAACGACG
CGACGAAGCTGACCGACTGGCGCACGTCGGGCAAGGCGCGCTCGCGCGGCGTCGAGCTCGACGTCTCCGGCAAGCTCGGC
GAGCGCGTGAACGTGATCGCGAGCTACGCGTACATCGACGCGAAGACGACCGAGGACCCGCTGTACGCGGGCAACCAGCT
GTGGAACGTCGCGCGTCACACCGCGTCGCTCGCGGCCGTCTACGACTTCGGCACGGTGGCGGGCGGCGACGATCTGCGTA
TCGGCGCGGACGTGCGTTACGTCGGCGCGCGGCCCGGCGATTCGGCGAACAGCTTCACGCTGCCGTCGTACGTGCTCGCC
GACGCGTTCGCGACCTACGACACGCGGATCGGCAAGCAGAAGCTGTCGTTCCAGCTCAACGTGAAGAACCTGTTCAACCG
CACGTACTACCCGTCGAGCGCGAACCGCTACTTCGTCGCGGTCGGCGACGCGCGCCAGGTGTCGCTGCTGACCACGCTGC
AGTTCTGA

Upstream 100 bases:

>100_bases
GCGTTACTGGGCGACCGTCGTGCCGGCCTATTCGACCCATTCGTGAGCGCGCCGAAAAATTTTTTCGCCGACCTGAGCTG
TTTCTCGATCTTCGCGTGAC

Downstream 100 bases:

>100_bases
CCATGCAATCGCCGCGCGGCCTTTGTGTCGGCGCGCGGCTTCGGAGAGGAATCCAGATGAATCTGAAGATGAAGAGCGGT
GCGCGCCGCCGCCTGTTGCG

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 855; Mature: 854

Protein sequence:

>855_residues
MGNESSPSPSSTDSPIMASIRLTYQRRPAPARHLPRASRPAASGRLARRLAGAVLLSALLPLPALADTDADAAPATQRAS
RRAFDIPAGPLEAALNRFGRDAGILLAFPPELTAGLASGGVHGRFDVDGAFDRLLAGTGLVALRQPGGGYTLMRADGSAA
GPVAAGVAPAAELPTIDVRSSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGITQGN
TLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAATDSVEVLKGPTSLLYGLMDPGGVVNVVTKQPQLVRYNVISLG
ASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRG
TALDPRTNAPLDIPARRRIDEPFNNMDGESQLAQLSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTRSND
ATHGSLSTDSYGIGYVTGKLTLAGMRHDVQVGFDTEYRRIYRKDLLRQAVKTPFSYIDPVYGLLPPSSTVSASDSDQTDT
LHDASAFFQDTVHLTDKWIVSGGLRYITYNQVAGRGRPFVANTDLSGSKWLPRAGVVYKWTDAFSLYGSYSQSLKPSSSI
APMTGYIIDGATPPEEATAWEVGGKLGLAGGMTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGVELDVSGKLG
ERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVAGGDDLRIGADVRYVGARPGDSANSFTLPSYVLA
DAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVAVGDARQVSLLTTLQF

Sequences:

>Translated_855_residues
MGNESSPSPSSTDSPIMASIRLTYQRRPAPARHLPRASRPAASGRLARRLAGAVLLSALLPLPALADTDADAAPATQRAS
RRAFDIPAGPLEAALNRFGRDAGILLAFPPELTAGLASGGVHGRFDVDGAFDRLLAGTGLVALRQPGGGYTLMRADGSAA
GPVAAGVAPAAELPTIDVRSSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGITQGN
TLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAATDSVEVLKGPTSLLYGLMDPGGVVNVVTKQPQLVRYNVISLG
ASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRG
TALDPRTNAPLDIPARRRIDEPFNNMDGESQLAQLSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTRSND
ATHGSLSTDSYGIGYVTGKLTLAGMRHDVQVGFDTEYRRIYRKDLLRQAVKTPFSYIDPVYGLLPPSSTVSASDSDQTDT
LHDASAFFQDTVHLTDKWIVSGGLRYITYNQVAGRGRPFVANTDLSGSKWLPRAGVVYKWTDAFSLYGSYSQSLKPSSSI
APMTGYIIDGATPPEEATAWEVGGKLGLAGGMTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGVELDVSGKLG
ERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVAGGDDLRIGADVRYVGARPGDSANSFTLPSYVLA
DAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVAVGDARQVSLLTTLQF
>Mature_854_residues
GNESSPSPSSTDSPIMASIRLTYQRRPAPARHLPRASRPAASGRLARRLAGAVLLSALLPLPALADTDADAAPATQRASR
RAFDIPAGPLEAALNRFGRDAGILLAFPPELTAGLASGGVHGRFDVDGAFDRLLAGTGLVALRQPGGGYTLMRADGSAAG
PVAAGVAPAAELPTIDVRSSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGITQGNT
LAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAATDSVEVLKGPTSLLYGLMDPGGVVNVVTKQPQLVRYNVISLGA
STFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRGT
ALDPRTNAPLDIPARRRIDEPFNNMDGESQLAQLSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTRSNDA
THGSLSTDSYGIGYVTGKLTLAGMRHDVQVGFDTEYRRIYRKDLLRQAVKTPFSYIDPVYGLLPPSSTVSASDSDQTDTL
HDASAFFQDTVHLTDKWIVSGGLRYITYNQVAGRGRPFVANTDLSGSKWLPRAGVVYKWTDAFSLYGSYSQSLKPSSSIA
PMTGYIIDGATPPEEATAWEVGGKLGLAGGMTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGVELDVSGKLGE
RVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVAGGDDLRIGADVRYVGARPGDSANSFTLPSYVLAD
AFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVAVGDARQVSLLTTLQF

Specific function: Specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=715, Percent_Identity=26.7132867132867, Blast_Score=167, Evalue=4e-42,
Organism=Escherichia coli, GI1790743, Length=820, Percent_Identity=23.1707317073171, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787723, Length=304, Percent_Identity=25.3289473684211, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787024, Length=403, Percent_Identity=26.0545905707196, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 92023; Mature: 91892

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNESSPSPSSTDSPIMASIRLTYQRRPAPARHLPRASRPAASGRLARRLAGAVLLSALL
CCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
PLPALADTDADAAPATQRASRRAFDIPAGPLEAALNRFGRDAGILLAFPPELTAGLASGG
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHCCC
VHGRFDVDGAFDRLLAGTGLVALRQPGGGYTLMRADGSAAGPVAAGVAPAAELPTIDVRS
CCCEEECCHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCHHHCCCCCCCCCEEECHH
SALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGITQGN
HHHHHHHHCCCHHHCCHHCCCCCCCCHHHHHCCHHHHHHCCCCCCHHHHHCCCCCCCCCC
TLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAATDSVEVLKGPTSLLYGLMDPGG
CCCCCHHHHHHCCCCCCCCCCHHHCCCCEECCCCCCCCCCCHHHHCCCHHHHHHCCCCCC
VVNVVTKQPQLVRYNVISLGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYW
EEEEEECCCCEEEEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHH
RNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRGTALDPRTNAPLDIPARRRID
HHHHHHHHHHHCCCCEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCC
EPFNNMDGESQLAQLSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTRSND
CCCCCCCCCHHHHEEEECCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCEECCCC
ATHGSLSTDSYGIGYVTGKLTLAGMRHDVQVGFDTEYRRIYRKDLLRQAVKTPFSYIDPV
CCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCH
YGLLPPSSTVSASDSDQTDTLHDASAFFQDTVHLTDKWIVSGGLRYITYNQVAGRGRPFV
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCEE
ANTDLSGSKWLPRAGVVYKWTDAFSLYGSYSQSLKPSSSIAPMTGYIIDGATPPEEATAW
EECCCCCCCCCCCCCCEEEECCHHHHHHCHHHCCCCCCCCCCCEEEEECCCCCCCCCCEE
EVGGKLGLAGGMTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGVELDVSGKLG
CCCCCEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCEEEEECCCCC
ERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVAGGDDLRIGADVRY
CCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCEEECCCEEE
VGARPGDSANSFTLPSYVLADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVA
ECCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCCCCCEEEEE
VGDARQVSLLTTLQF
ECCCCEEEEEEEECC
>Mature Secondary Structure 
GNESSPSPSSTDSPIMASIRLTYQRRPAPARHLPRASRPAASGRLARRLAGAVLLSALL
CCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
PLPALADTDADAAPATQRASRRAFDIPAGPLEAALNRFGRDAGILLAFPPELTAGLASGG
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHCCC
VHGRFDVDGAFDRLLAGTGLVALRQPGGGYTLMRADGSAAGPVAAGVAPAAELPTIDVRS
CCCEEECCHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCHHHCCCCCCCCCEEECHH
SALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGITQGN
HHHHHHHHCCCHHHCCHHCCCCCCCCHHHHHCCHHHHHHCCCCCCHHHHHCCCCCCCCCC
TLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAATDSVEVLKGPTSLLYGLMDPGG
CCCCCHHHHHHCCCCCCCCCCHHHCCCCEECCCCCCCCCCCHHHHCCCHHHHHHCCCCCC
VVNVVTKQPQLVRYNVISLGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYW
EEEEEECCCCEEEEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHH
RNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRGTALDPRTNAPLDIPARRRID
HHHHHHHHHHHCCCCEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCC
EPFNNMDGESQLAQLSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTRSND
CCCCCCCCCHHHHEEEECCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCEECCCC
ATHGSLSTDSYGIGYVTGKLTLAGMRHDVQVGFDTEYRRIYRKDLLRQAVKTPFSYIDPV
CCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCH
YGLLPPSSTVSASDSDQTDTLHDASAFFQDTVHLTDKWIVSGGLRYITYNQVAGRGRPFV
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCEE
ANTDLSGSKWLPRAGVVYKWTDAFSLYGSYSQSLKPSSSIAPMTGYIIDGATPPEEATAW
EECCCCCCCCCCCCCCEEEECCHHHHHHCHHHCCCCCCCCCCCEEEEECCCCCCCCCCEE
EVGGKLGLAGGMTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGVELDVSGKLG
CCCCCEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCEEEEECCCCC
ERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVAGGDDLRIGADVRY
CCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCEEECCCEEE
VGARPGDSANSFTLPSYVLADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVA
ECCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCCCCCEEEEE
VGDARQVSLLTTLQF
ECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8392140 [H]