| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is fecR [H]
Identifier: 116689382
GI number: 116689382
Start: 1497503
End: 1498495
Strand: Direct
Name: fecR [H]
Synonym: Bcen2424_1360
Alternate gene names: 116689382
Gene position: 1497503-1498495 (Clockwise)
Preceding gene: 116689381
Following gene: 116689383
Centisome position: 42.98
GC content: 74.12
Gene sequence:
>993_bases ATGGCCGCCCCGGGAGCGCCGGCGGTGCCGCCGCACGTCGCCCGTCGCGCAGTCGAGTGGTGGGTCGACCGGCAGTCCGG CCGCACGGACGACGCGTTCACCGCCGCGCTCGCGCGCTGGCGCGCGGAAGATCCGGCGCACGACGCGGCGTGGCGTCACA TCGAAGCGATGCAGGGCCGGTTCGGCCGGCTGGCGGCCGGGCTCGACGCGCAGGCCGCACAGGCCGCGCTGCTGCCGAAG CGGGCCGGCCGCCGCGCGGCCGTGAAGACGCTGGCCGTGCTGCTGTTCGCGGGCGGCGCCGCATGGATGGCCGAGCCTTC GCGGCGCGCGACGATCTGGCCGGCGGACCTACGCACGGCGGTCGGGGAGCGGCGCACGGTGACGCTTGCGGATGGCACGG TCGTCGTGCTCGATACCGACACGGCGCTCGACGTGCGCTTCGACGATATGGCGCGGCGCCTGCGCTTGCTGCGCGGCACG ATCATGATCACCAGCGGTCACGACGATCGTCTGCCCGCGCGGCCGCTCGTCGTCGCGACCGCGCAGGGCGAGCTGCGACC GCTCGGCACGCGCTTCGCGGTGCGGCAGCGCGACGGCGCGACACGCGTCGAGGTGTTCGCCGGCGCCGTCCAGGTGCAGC CGGTCGATGCGTCGGCCGGCTCGCGCGTGATCGCGGCCGGGACGGGCGCGGATTTCACGCGCGACGCGATCGGGGCGCCT GCGCCGCTCGATCCCTATGCGTCCGCGTGGACGAGCGGCATGCTCGTCGCGTCGCGCATGCGGCTGGCCGATCTCGTTGC CGAGCTCGACCGCTATCGCCGGGGCAACCTGCGCTGCGATCCGGCCGTGGCCGACCTGCGCGTGTCGGGCACCTATCCGC TCGACGATCCGCAGCGCGTGCTCGATACGCTGATGGCGATGCTGCCGATCGACGTCCATTACCTGACGCGTTACTGGGCG ACCGTCGTGCCGGCCTATTCGACCCATTCGTGA
Upstream 100 bases:
>100_bases GGTCGAGATCGCGCGCCAGCTCGGCGTGTCGCTCGCGACGGTGAAGCGCTATCTCGTGAAGGCCGGCACGCAGTGCTTCT TCGCGATGGCGGCCTGACCG
Downstream 100 bases:
>100_bases GCGCGCCGAAAAATTTTTTCGCCGACCTGAGCTGTTTCTCGATCTTCGCGTGACATGGGTAATGAAAGCAGCCCTAGCCC ATCGTCCACCGACTCTCCGA
Product: putative FecR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MAAPGAPAVPPHVARRAVEWWVDRQSGRTDDAFTAALARWRAEDPAHDAAWRHIEAMQGRFGRLAAGLDAQAAQAALLPK RAGRRAAVKTLAVLLFAGGAAWMAEPSRRATIWPADLRTAVGERRTVTLADGTVVVLDTDTALDVRFDDMARRLRLLRGT IMITSGHDDRLPARPLVVATAQGELRPLGTRFAVRQRDGATRVEVFAGAVQVQPVDASAGSRVIAAGTGADFTRDAIGAP APLDPYASAWTSGMLVASRMRLADLVAELDRYRRGNLRCDPAVADLRVSGTYPLDDPQRVLDTLMAMLPIDVHYLTRYWA TVVPAYSTHS
Sequences:
>Translated_330_residues MAAPGAPAVPPHVARRAVEWWVDRQSGRTDDAFTAALARWRAEDPAHDAAWRHIEAMQGRFGRLAAGLDAQAAQAALLPK RAGRRAAVKTLAVLLFAGGAAWMAEPSRRATIWPADLRTAVGERRTVTLADGTVVVLDTDTALDVRFDDMARRLRLLRGT IMITSGHDDRLPARPLVVATAQGELRPLGTRFAVRQRDGATRVEVFAGAVQVQPVDASAGSRVIAAGTGADFTRDAIGAP APLDPYASAWTSGMLVASRMRLADLVAELDRYRRGNLRCDPAVADLRVSGTYPLDDPQRVLDTLMAMLPIDVHYLTRYWA TVVPAYSTHS >Mature_329_residues AAPGAPAVPPHVARRAVEWWVDRQSGRTDDAFTAALARWRAEDPAHDAAWRHIEAMQGRFGRLAAGLDAQAAQAALLPKR AGRRAAVKTLAVLLFAGGAAWMAEPSRRATIWPADLRTAVGERRTVTLADGTVVVLDTDTALDVRFDDMARRLRLLRGTI MITSGHDDRLPARPLVVATAQGELRPLGTRFAVRQRDGATRVEVFAGAVQVQPVDASAGSRVIAAGTGADFTRDAIGAPA PLDPYASAWTSGMLVASRMRLADLVAELDRYRRGNLRCDPAVADLRVSGTYPLDDPQRVLDTLMAMLPIDVHYLTRYWAT VVPAYSTHS
Specific function: Regulation of iron dicitrate transport. In the absence of citrate fecR inactivates fecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790745, Length=310, Percent_Identity=37.0967741935484, Blast_Score=181, Evalue=6e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006860 - InterPro: IPR012373 [H]
Pfam domain/function: PF04773 FecR [H]
EC number: NA
Molecular weight: Translated: 35699; Mature: 35568
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPGAPAVPPHVARRAVEWWVDRQSGRTDDAFTAALARWRAEDPAHDAAWRHIEAMQGR CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC FGRLAAGLDAQAAQAALLPKRAGRRAAVKTLAVLLFAGGAAWMAEPSRRATIWPADLRTA HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHCCCCCCCEECHHHHHHH VGERRTVTLADGTVVVLDTDTALDVRFDDMARRLRLLRGTIMITSGHDDRLPARPLVVAT CCCCEEEEEECCEEEEEECCCEEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCCCEEEEE AQGELRPLGTRFAVRQRDGATRVEVFAGAVQVQPVDASAGSRVIAAGTGADFTRDAIGAP CCCCCCCCCHHEEEECCCCCCEEEEEECEEEEEEECCCCCCEEEEECCCCCCHHHHCCCC APLDPYASAWTSGMLVASRMRLADLVAELDRYRRGNLRCDPAVADLRVSGTYPLDDPQRV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCCHHHH LDTLMAMLPIDVHYLTRYWATVVPAYSTHS HHHHHHHHCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AAPGAPAVPPHVARRAVEWWVDRQSGRTDDAFTAALARWRAEDPAHDAAWRHIEAMQGR CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC FGRLAAGLDAQAAQAALLPKRAGRRAAVKTLAVLLFAGGAAWMAEPSRRATIWPADLRTA HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHCCCCCCCEECHHHHHHH VGERRTVTLADGTVVVLDTDTALDVRFDDMARRLRLLRGTIMITSGHDDRLPARPLVVAT CCCCEEEEEECCEEEEEECCCEEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCCCEEEEE AQGELRPLGTRFAVRQRDGATRVEVFAGAVQVQPVDASAGSRVIAAGTGADFTRDAIGAP CCCCCCCCCHHEEEECCCCCCEEEEEECEEEEEEECCCCCCEEEEECCCCCCHHHHCCCC APLDPYASAWTSGMLVASRMRLADLVAELDRYRRGNLRCDPAVADLRVSGTYPLDDPQRV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCCHHHH LDTLMAMLPIDVHYLTRYWATVVPAYSTHS HHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2254251; 7610040; 9278503 [H]