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The map label for this gene is fecI [H]

Identifier: 116689381

GI number: 116689381

Start: 1496990

End: 1497499

Strand: Direct

Name: fecI [H]

Synonym: Bcen2424_1359

Alternate gene names: 116689381

Gene position: 1496990-1497499 (Clockwise)

Preceding gene: 116689380

Following gene: 116689382

Centisome position: 42.97

GC content: 70.2

Gene sequence:

>510_bases
ATGTCCGCTGACAAGCTGTCCCTCCATCGAGAAATCGACGCCCTCTATGTCGGCCACCACGCGTGGCTGCGCGGCTGGCT
GAGCCGGAAGCTCGGTTGCGCACACCGCGCGGCCGACCTGGCGCACGACACGTTCGTGCGCCTGCTCGCACGCGACGAGC
CGATCGGCGCCGACGAGCCGCGTGCGTTCCTGACCACGGTCGCGCAGCGTGTGCTGAGCAACCACTGGCGGCGCGAGCAG
ATCGAGCGCGCGTATCTCGACGTGCTCGCGCAGCGCCCGGAAGCGGTTGGGCCGTCGCCGGAAGAGCGGGCCGTCATGGT
CGAGACGCTGCTCGAGATCGACCGGCTGCTCGACGGCCTGCCGCCCGCGGCGAAGCGTGCGTTCCTGCTCGCACAGCTCG
ACGGGCTCACGCAGGTCGAGATCGCGCGCCAGCTCGGCGTGTCGCTCGCGACGGTGAAGCGCTATCTCGTGAAGGCCGGC
ACGCAGTGCTTCTTCGCGATGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCCACCGGCGCACCGAAACCGAGGTCGCTATCTTACTTTTGTATATAATAATCATTCTCATTTACAGAATCGTTGACGCT
CGCGCACCCGGAACCCGGCC

Downstream 100 bases:

>100_bases
CCGATGGCCGCCCCGGGAGCGCCGGCGGTGCCGCCGCACGTCGCCCGTCGCGCAGTCGAGTGGTGGGTCGACCGGCAGTC
CGGCCGCACGGACGACGCGT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSADKLSLHREIDALYVGHHAWLRGWLSRKLGCAHRAADLAHDTFVRLLARDEPIGADEPRAFLTTVAQRVLSNHWRREQ
IERAYLDVLAQRPEAVGPSPEERAVMVETLLEIDRLLDGLPPAAKRAFLLAQLDGLTQVEIARQLGVSLATVKRYLVKAG
TQCFFAMAA

Sequences:

>Translated_169_residues
MSADKLSLHREIDALYVGHHAWLRGWLSRKLGCAHRAADLAHDTFVRLLARDEPIGADEPRAFLTTVAQRVLSNHWRREQ
IERAYLDVLAQRPEAVGPSPEERAVMVETLLEIDRLLDGLPPAAKRAFLLAQLDGLTQVEIARQLGVSLATVKRYLVKAG
TQCFFAMAA
>Mature_168_residues
SADKLSLHREIDALYVGHHAWLRGWLSRKLGCAHRAADLAHDTFVRLLARDEPIGADEPRAFLTTVAQRVLSNHWRREQI
ERAYLDVLAQRPEAVGPSPEERAVMVETLLEIDRLLDGLPPAAKRAFLLAQLDGLTQVEIARQLGVSLATVKRYLVKAGT
QCFFAMAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=154, Percent_Identity=48.0519480519481, Blast_Score=156, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18888; Mature: 18757

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADKLSLHREIDALYVGHHAWLRGWLSRKLGCAHRAADLAHDTFVRLLARDEPIGADEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQRVLSNHWRREQIERAYLDVLAQRPEAVGPSPEERAVMVETLLEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PPAAKRAFLLAQLDGLTQVEIARQLGVSLATVKRYLVKAGTQCFFAMAA
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHEECC
>Mature Secondary Structure 
SADKLSLHREIDALYVGHHAWLRGWLSRKLGCAHRAADLAHDTFVRLLARDEPIGADEP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQRVLSNHWRREQIERAYLDVLAQRPEAVGPSPEERAVMVETLLEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PPAAKRAFLLAQLDGLTQVEIARQLGVSLATVKRYLVKAGTQCFFAMAA
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]