| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689192
Identifier: 116689192
GI number: 116689192
Start: 1284845
End: 1286020
Strand: Direct
Name: 116689192
Synonym: Bcen2424_1170
Alternate gene names: NA
Gene position: 1284845-1286020 (Clockwise)
Preceding gene: 116689190
Following gene: 116689193
Centisome position: 36.88
GC content: 71.77
Gene sequence:
>1176_bases ATGACGCCCGCCGCAACGCTGCTCGACTGGCTGCTGATCATCTTCACGCTGGCCGCGGCCGGCTACGCGCTCGTCGCGGC CTTCGCGCCGCGGCCGCGCACGCCGCGCACCGCGGTGCGCGACGGCTTCGAGCCGGTCAGTGTGCTGAAGCCGCTGTGCG GCGCGGAGCCGCACCTGTATGAAAACCTCGCGACCTTCTGCGCGCAGCGCCATCCTCGCTACGAGGTGCTGCTCGGCGTC GCATCGTCGGCCGATCCGGCCATCGCCGTCGTCGAGCGGCTGCGCGCCGATCATCCGGAGTGCGACATCACGCTCGTGAT CGACGCGCGCGTGCATGGCAAGAACCTGAAGGTCAGCAACCTGATCAATCTCGCCGAGCGCGCGAAATATGGCCGCATCG TGATCGCGGACAGCGACATCGCGGTGCAGCCCGACTATCTGGAGCGTGTCACGGCGCCGCTGGCGGACCCGTCGGTGGGG GTCGTCACGTGCCTGTATCATGCGCGCAGCGTCGGCGGCTTCTGGACGCGGATCGGCGCGCAGTTCGTCGACGCTTGGTT CGCGCCGTCGGTGCGCATCACGCACCTCGGCCGCTCGAGCCGCTTCGGCTTCGGCGCGACGCTCGCGCTCACGCGCGACA CGCTCGACCGGATCGGCGGGCTCGTCGCGCTGAAGGACGAACTGGCCGACGATTTCTGGCTGGCCGAGCTGCCGCGTCGC CTCGGGCGGCGCACCGTGCTGTCGGAGGTCGAGGTCGCGACCGACGTGATCGAGCCGTCGTTCGGGCCGCTGTGGCACCG CGAGACGCGCTGGCTGCGCACGATCCGTTCGCTGAATCCGGCCGGCTTCGCGTTCCTGTTCATTACGTTTACCGTGCCGT GGCTCGCGATCGGCGCGGCGCTCGCGTTGCGCCTCGACGGCACCTTCGCCGGCACGCTGGCGGGCGGGGCGGCCGCGCTC GGCGCATTCGGCCGGCTCGTGCTGCATGCGCGCGGCGAGGACGGCTGGCGCGCGTTCTGGCGCGACCTGCCGCTCGTCGC GGTGCGCGACACGCTGCTCGCGCTCGAGTGGCTCGCGGCCGTGTTCGGCACGCACGTCGTGTGGCGCGGCGCCAGGATGA CGGTCGTCGGCGGCGAACGCGCGACCGCGGCCGTGGAAGCAGTGGACGGCCGCTAG
Upstream 100 bases:
>100_bases GTCGGGTCGTGCCCGCGTTCGTCGTTGTCGGAATACCGCATCACGCTCAATCACGCTCAAGCGTTTGCCAGGGCGCCCCG TTCGCCGGGAGGCCTCGCGC
Downstream 100 bases:
>100_bases GGCCGTCGATCGAAACCGGCCCGCGGGCCGAGACGCGTCGCACGGCGAAGCCGCGCGGCGCGACATGACAGAGAGGCGGG CGCCGGCATGGCGGCCCGCG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: Glycosyltransferase; Glycosyl Transferase Family Protein; Glucosyltransferase; Cell Wall Biosynthesis Glycosyltransferase-Like Protein; Glycosyl Transferase Group 2 Family; Glycosyl Transferase; Cell Wall Biosynthesis Glycosyltransferase; Glycosyl Transferase Group 2 Family Protein; Glycosyl Transferase Protein; Acyl-CoA Dehydrogenase-Like; Glycosyl Tranferase Homolog; Syl Transferase Group 2 Family Protein; Acyl-CoA Dehydrogenase-Like Protein; UDP-GlucoseCeramide Glycosyltransferase; Glycosyltransferase Family; Putatiave Glycosyltransferase; Family 2 Glycosyl Transferase
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MTPAATLLDWLLIIFTLAAAGYALVAAFAPRPRTPRTAVRDGFEPVSVLKPLCGAEPHLYENLATFCAQRHPRYEVLLGV ASSADPAIAVVERLRADHPECDITLVIDARVHGKNLKVSNLINLAERAKYGRIVIADSDIAVQPDYLERVTAPLADPSVG VVTCLYHARSVGGFWTRIGAQFVDAWFAPSVRITHLGRSSRFGFGATLALTRDTLDRIGGLVALKDELADDFWLAELPRR LGRRTVLSEVEVATDVIEPSFGPLWHRETRWLRTIRSLNPAGFAFLFITFTVPWLAIGAALALRLDGTFAGTLAGGAAAL GAFGRLVLHARGEDGWRAFWRDLPLVAVRDTLLALEWLAAVFGTHVVWRGARMTVVGGERATAAVEAVDGR
Sequences:
>Translated_391_residues MTPAATLLDWLLIIFTLAAAGYALVAAFAPRPRTPRTAVRDGFEPVSVLKPLCGAEPHLYENLATFCAQRHPRYEVLLGV ASSADPAIAVVERLRADHPECDITLVIDARVHGKNLKVSNLINLAERAKYGRIVIADSDIAVQPDYLERVTAPLADPSVG VVTCLYHARSVGGFWTRIGAQFVDAWFAPSVRITHLGRSSRFGFGATLALTRDTLDRIGGLVALKDELADDFWLAELPRR LGRRTVLSEVEVATDVIEPSFGPLWHRETRWLRTIRSLNPAGFAFLFITFTVPWLAIGAALALRLDGTFAGTLAGGAAAL GAFGRLVLHARGEDGWRAFWRDLPLVAVRDTLLALEWLAAVFGTHVVWRGARMTVVGGERATAAVEAVDGR >Mature_390_residues TPAATLLDWLLIIFTLAAAGYALVAAFAPRPRTPRTAVRDGFEPVSVLKPLCGAEPHLYENLATFCAQRHPRYEVLLGVA SSADPAIAVVERLRADHPECDITLVIDARVHGKNLKVSNLINLAERAKYGRIVIADSDIAVQPDYLERVTAPLADPSVGV VTCLYHARSVGGFWTRIGAQFVDAWFAPSVRITHLGRSSRFGFGATLALTRDTLDRIGGLVALKDELADDFWLAELPRRL GRRTVLSEVEVATDVIEPSFGPLWHRETRWLRTIRSLNPAGFAFLFITFTVPWLAIGAALALRLDGTFAGTLAGGAAALG AFGRLVLHARGEDGWRAFWRDLPLVAVRDTLLALEWLAAVFGTHVVWRGARMTVVGGERATAAVEAVDGR
Specific function: Unknown
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4507811, Length=239, Percent_Identity=32.6359832635983, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147526, Length=275, Percent_Identity=26.5454545454545, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI32566973, Length=272, Percent_Identity=25.7352941176471, Blast_Score=92, Evalue=5e-19, Organism=Caenorhabditis elegans, GI32564728, Length=274, Percent_Identity=26.2773722627737, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI25149577, Length=274, Percent_Identity=26.2773722627737, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25149574, Length=274, Percent_Identity=26.2773722627737, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25149580, Length=274, Percent_Identity=26.2773722627737, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24657569, Length=238, Percent_Identity=29.4117647058824, Blast_Score=95, Evalue=8e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42558; Mature: 42426
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAATLLDWLLIIFTLAAAGYALVAAFAPRPRTPRTAVRDGFEPVSVLKPLCGAEPHLY CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCHHH ENLATFCAQRHPRYEVLLGVASSADPAIAVVERLRADHPECDITLVIDARVHGKNLKVSN HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHH LINLAERAKYGRIVIADSDIAVQPDYLERVTAPLADPSVGVVTCLYHARSVGGFWTRIGA HHHHHHHCCCCEEEEECCCCEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHH QFVDAWFAPSVRITHLGRSSRFGFGATLALTRDTLDRIGGLVALKDELADDFWLAELPRR HHHHHHCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHCCEEEEHHHHCCHHHHHHHHHH LGRRTVLSEVEVATDVIEPSFGPLWHRETRWLRTIRSLNPAGFAFLFITFTVPWLAIGAA HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LALRLDGTFAGTLAGGAAALGAFGRLVLHARGEDGWRAFWRDLPLVAVRDTLLALEWLAA HHEEECCCEEHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHH VFGTHVVWRGARMTVVGGERATAAVEAVDGR HHHHHHHCCCCEEEEECCCCHHHHHEECCCC >Mature Secondary Structure TPAATLLDWLLIIFTLAAAGYALVAAFAPRPRTPRTAVRDGFEPVSVLKPLCGAEPHLY CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCHHH ENLATFCAQRHPRYEVLLGVASSADPAIAVVERLRADHPECDITLVIDARVHGKNLKVSN HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHH LINLAERAKYGRIVIADSDIAVQPDYLERVTAPLADPSVGVVTCLYHARSVGGFWTRIGA HHHHHHHCCCCEEEEECCCCEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHH QFVDAWFAPSVRITHLGRSSRFGFGATLALTRDTLDRIGGLVALKDELADDFWLAELPRR HHHHHHCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHCCEEEEHHHHCCHHHHHHHHHH LGRRTVLSEVEVATDVIEPSFGPLWHRETRWLRTIRSLNPAGFAFLFITFTVPWLAIGAA HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LALRLDGTFAGTLAGGAAALGAFGRLVLHARGEDGWRAFWRDLPLVAVRDTLLALEWLAA HHEEECCCEEHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHH VFGTHVVWRGARMTVVGGERATAAVEAVDGR HHHHHHHCCCCEEEEECCCCHHHHHEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA