| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689164
Identifier: 116689164
GI number: 116689164
Start: 1252514
End: 1253707
Strand: Reverse
Name: 116689164
Synonym: Bcen2424_1142
Alternate gene names: NA
Gene position: 1253707-1252514 (Counterclockwise)
Preceding gene: 116689168
Following gene: 116689163
Centisome position: 35.99
GC content: 71.02
Gene sequence:
>1194_bases ATGCCACGCACCACCGCTGCCCCCCTCTCCGCCGTGCCGCTCGCGCCGGGCGAACCGATCGCCTGCGACCTCTTCTGCAC GGTGATCGACAATTTCGGCGACATCGGCGTGTGCTGGCGCGTCGCGCGCCAGCTCGCACACGAGCACGGCTGGCAGGTTC GCCTGTTCGTCGATGACCTGCACACGTTCGCGCGCCTGCTGCCGCAGGTCGATCCCGACGCGGGGCGGCAGACGGTCGAC GCGATCGTGATCGAGCACTGGCATGCGGAAGTCGGCGACGCGCTGGACATCGCCGATGTCGTGATCGAGGCGTTCGCGTG CGAGTTGCCCGGCCCGTATCTCGCGGCGATGGCGCGGCGCGCGCGCCGCCCCGTGTGGATCAACCTCGAATACCTGAGCG CCGAGGACTGGGTCGCCGATTTCCATTTGCGGCCGTCGCCGCATCCACGCTATCCGCTACTGAAGACGTTCTTCTTCCCG GGCCTGTCGGCCGGCACCGGCGGCGTGCCGAAGGAGCGCGACCTCGACGCGCGCCGCGCGGCCTTCGACGCCGATCCGGC AGCCCGCGCCGCGTGGTGGCAGCGCGCGACCGGCGCCGCGGCGCCGGCGCCCGGCACGACGGTCGTCAGCCTGTTCGCCT ACGAAAACCCGGCCGTCGACGCGCTGCTCGCGCAGTGGCGCGACGGCCCGTCGCCGGTCGTCGCGCTCGTGCCGACCGGG CGCCTGTCGCCCGCCGTCGCGCGCTTTTTCGGGGTCGAATCGTTCGCGGCGGGCGTACGGGCGCGCAGCGGCAACCTGAC CGCCCATGGCCTCGCGTTCGTTCCGCAGGCCGACTACGATCCGCTGCTGTGGGTCGCCAATCTCAATTTCGTGCGCGGCG AGGATTCGTTCGTCCGCGCGCAGTGGGCGCGCAAGCCGTTCGTGTGGCACATCTATCCGCAGGCCGACGACGTGCACCTG CCCAAGCTCGATGCCGCGCTCGCGCACCTGTCGGCCGGCCTCGCCGATGCGCCGCGCGCCGCGCTCGAGCGGTTCTGGCA TGCATGGAACAGCGCCGGCACGCCCGACTGGGCCGATTTCTGGCAACACCGCGCCGCGCTTGACGCGAATGCGCTCCGCT GGGCCGACGCGCTCGCGGCCGTCGGCGATCTCGCCGGAAAGCTGGCGGAATACGCAAAATCTCAGTTAAAATAA
Upstream 100 bases:
>100_bases AGCGGAGGCTTCTGGGGATGTCATGCGTGATCCGGGCGCCTTGTAACGCGGAACGGGTCTATTAGAATCGCCAGTTTAGA GCATTCACCGGCCCGCTTCG
Downstream 100 bases:
>100_bases GCGGTTATCCGACGGCTGACCACGCAAGCGCTCGCGTTTGGGCTCCTGGCGCCCACCGGAACGCACCGCCGCTTGCGCCG TCAGCCGTTGCGCAACGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MPRTTAAPLSAVPLAPGEPIACDLFCTVIDNFGDIGVCWRVARQLAHEHGWQVRLFVDDLHTFARLLPQVDPDAGRQTVD AIVIEHWHAEVGDALDIADVVIEAFACELPGPYLAAMARRARRPVWINLEYLSAEDWVADFHLRPSPHPRYPLLKTFFFP GLSAGTGGVPKERDLDARRAAFDADPAARAAWWQRATGAAAPAPGTTVVSLFAYENPAVDALLAQWRDGPSPVVALVPTG RLSPAVARFFGVESFAAGVRARSGNLTAHGLAFVPQADYDPLLWVANLNFVRGEDSFVRAQWARKPFVWHIYPQADDVHL PKLDAALAHLSAGLADAPRAALERFWHAWNSAGTPDWADFWQHRAALDANALRWADALAAVGDLAGKLAEYAKSQLK
Sequences:
>Translated_397_residues MPRTTAAPLSAVPLAPGEPIACDLFCTVIDNFGDIGVCWRVARQLAHEHGWQVRLFVDDLHTFARLLPQVDPDAGRQTVD AIVIEHWHAEVGDALDIADVVIEAFACELPGPYLAAMARRARRPVWINLEYLSAEDWVADFHLRPSPHPRYPLLKTFFFP GLSAGTGGVPKERDLDARRAAFDADPAARAAWWQRATGAAAPAPGTTVVSLFAYENPAVDALLAQWRDGPSPVVALVPTG RLSPAVARFFGVESFAAGVRARSGNLTAHGLAFVPQADYDPLLWVANLNFVRGEDSFVRAQWARKPFVWHIYPQADDVHL PKLDAALAHLSAGLADAPRAALERFWHAWNSAGTPDWADFWQHRAALDANALRWADALAAVGDLAGKLAEYAKSQLK >Mature_396_residues PRTTAAPLSAVPLAPGEPIACDLFCTVIDNFGDIGVCWRVARQLAHEHGWQVRLFVDDLHTFARLLPQVDPDAGRQTVDA IVIEHWHAEVGDALDIADVVIEAFACELPGPYLAAMARRARRPVWINLEYLSAEDWVADFHLRPSPHPRYPLLKTFFFPG LSAGTGGVPKERDLDARRAAFDADPAARAAWWQRATGAAAPAPGTTVVSLFAYENPAVDALLAQWRDGPSPVVALVPTGR LSPAVARFFGVESFAAGVRARSGNLTAHGLAFVPQADYDPLLWVANLNFVRGEDSFVRAQWARKPFVWHIYPQADDVHLP KLDAALAHLSAGLADAPRAALERFWHAWNSAGTPDWADFWQHRAALDANALRWADALAAVGDLAGKLAEYAKSQLK
Specific function: Unknown
COG id: COG4394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43369; Mature: 43238
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS50835 IG_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRTTAAPLSAVPLAPGEPIACDLFCTVIDNFGDIGVCWRVARQLAHEHGWQVRLFVDDL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHH HTFARLLPQVDPDAGRQTVDAIVIEHWHAEVGDALDIADVVIEAFACELPGPYLAAMARR HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH ARRPVWINLEYLSAEDWVADFHLRPSPHPRYPLLKTFFFPGLSAGTGGVPKERDLDARRA HCCCEEEEEEEECCCCHHEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH AFDADPAARAAWWQRATGAAAPAPGTTVVSLFAYENPAVDALLAQWRDGPSPVVALVPTG HCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCC RLSPAVARFFGVESFAAGVRARSGNLTAHGLAFVPQADYDPLLWVANLNFVRGEDSFVRA CCCHHHHHHHHHHHHHHHHEECCCCCEECCEEECCCCCCCCEEEEECCEEECCCCHHHHH QWARKPFVWHIYPQADDVHLPKLDAALAHLSAGLADAPRAALERFWHAWNSAGTPDWADF HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHH WQHRAALDANALRWADALAAVGDLAGKLAEYAKSQLK HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PRTTAAPLSAVPLAPGEPIACDLFCTVIDNFGDIGVCWRVARQLAHEHGWQVRLFVDDL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHH HTFARLLPQVDPDAGRQTVDAIVIEHWHAEVGDALDIADVVIEAFACELPGPYLAAMARR HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH ARRPVWINLEYLSAEDWVADFHLRPSPHPRYPLLKTFFFPGLSAGTGGVPKERDLDARRA HCCCEEEEEEEECCCCHHEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH AFDADPAARAAWWQRATGAAAPAPGTTVVSLFAYENPAVDALLAQWRDGPSPVVALVPTG HCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCC RLSPAVARFFGVESFAAGVRARSGNLTAHGLAFVPQADYDPLLWVANLNFVRGEDSFVRA CCCHHHHHHHHHHHHHHHHEECCCCCEECCEEECCCCCCCCEEEEECCEEECCCCHHHHH QWARKPFVWHIYPQADDVHLPKLDAALAHLSAGLADAPRAALERFWHAWNSAGTPDWADF HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHH WQHRAALDANALRWADALAAVGDLAGKLAEYAKSQLK HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA