| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is pncB [H]
Identifier: 116689123
GI number: 116689123
Start: 1211375
End: 1212574
Strand: Direct
Name: pncB [H]
Synonym: Bcen2424_1100
Alternate gene names: 116689123
Gene position: 1211375-1212574 (Clockwise)
Preceding gene: 116689116
Following gene: 116689124
Centisome position: 34.77
GC content: 63.5
Gene sequence:
>1200_bases ATGATCATCACTTCGCTGCTCGACACGGATCTCTACAAGTTCACGATGATGCAGGTCGTCCTGCATCACTTCCCGGCTGC AAACGTCGAATACCGCTTCCGGTGCCGCACGCCCGGCGTCGATCTCGTGCCGTACATCGACGAGATTCGCGACGAGGTGC GCGGCCTGTGCTCGCTGCGCTTTGCCGACGTCGAACTCGACTACCTGCGGCGGATGCGCTTCATCAAGAGCGACTTCGTC GACTTCCTCGCGCTGTTCCACCTGAACGAGAAGTACATCTCGATCACGCCGTCGCCGAAGGGCAACGGCGAAATCGACAT CGTGATCGAGGGGCCGTGGCTGCATACGATCCTGTTCGAGATCCCGGTGCTCGCGATCGTCAACGAAGTCTATTTCCGCA ACACGCAGCGCGAGCCCGACTATCGCGAAGGGCGCGAGCGGCTGCGCGAGAAGATCAAGCTGCTCGGCGCGAAGCCCGAA TTCGCCGACTGCAAGATCGCCGACTACGGCACGCGCCGGCGCTTCTCGAAGGTCTGGCACGAGGAAGTCGCGCTCACGCT GCGTGACGGGCTCGGCCCGCAGTTCGCGGGCACGAGCAACGTGCTGTACGCGATGAAGCACGACATCACGCCGCTCGGCA CGATGGCGCACGAATACCTGCAGGCGTGCCAGGCGCTCGGCCCGCGGCTGCGCGACTCGCAGATCTACGGCTTCGAGATG TGGGCGAAGGAATATCGCGGCGACCTCGGGATCGCGCTGTCGGACGTCTACGGGATGGACGCGTTCCTGAACGACTTCGA CATGTACTTCTGCAAACTGTTCGACGGTGCGCGCCACGATTCGGGCGATCCGTTCGAGTGGGGCGAGCGGATGCTGCGCC ATTACGAGGCGAACCGGTGCGACCCGCGCACCAAGGTGCTCGTGTTCTCGGACGCGCTCGACATCCCGAAGGTCATGCAG CTGTACGAACGGTTCCGCGGCCGCTGCAAGCTCGCGTTCGGCGTCGGCACCAACCTCACCAACGATCTCGGCTACGTGCC GCTGCAGATCGTGATCAAGATGGTTCGCTGCAACGGCCAGCCGGTCGCGAAGCTGTCCGATTCGCCGGGCAAGAGCATGT GCGACGACAAGGCGTATCTCGCGTACCTGCGGCAGGTGTTCGGCATCGCGCAGCCGGTCGACGAAGACGCGTCGAAGTAG
Upstream 100 bases:
>100_bases GTTTCACGATGGTCCGGCCCGCATTCGGGTAACATGACCGACAGACCGGGCGGCGCGCGGTGCGCCGGGGCCCGGTCACG ATATTGGCGCTGCCGTCATC
Downstream 100 bases:
>100_bases GCGTCGGCCGTTCGGCCGAAGGTGTGTCGCGGCAGGGGTGGCCGGTATAATCCGACGTATTGCACGCCAACGTCACGAGG ACCGTTCATGGACACTTCCG
Product: nicotinate phosphoribosyltransferase
Products: NA
Alternate protein names: NAPRTase [H]
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MIITSLLDTDLYKFTMMQVVLHHFPAANVEYRFRCRTPGVDLVPYIDEIRDEVRGLCSLRFADVELDYLRRMRFIKSDFV DFLALFHLNEKYISITPSPKGNGEIDIVIEGPWLHTILFEIPVLAIVNEVYFRNTQREPDYREGRERLREKIKLLGAKPE FADCKIADYGTRRRFSKVWHEEVALTLRDGLGPQFAGTSNVLYAMKHDITPLGTMAHEYLQACQALGPRLRDSQIYGFEM WAKEYRGDLGIALSDVYGMDAFLNDFDMYFCKLFDGARHDSGDPFEWGERMLRHYEANRCDPRTKVLVFSDALDIPKVMQ LYERFRGRCKLAFGVGTNLTNDLGYVPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGIAQPVDEDASK
Sequences:
>Translated_399_residues MIITSLLDTDLYKFTMMQVVLHHFPAANVEYRFRCRTPGVDLVPYIDEIRDEVRGLCSLRFADVELDYLRRMRFIKSDFV DFLALFHLNEKYISITPSPKGNGEIDIVIEGPWLHTILFEIPVLAIVNEVYFRNTQREPDYREGRERLREKIKLLGAKPE FADCKIADYGTRRRFSKVWHEEVALTLRDGLGPQFAGTSNVLYAMKHDITPLGTMAHEYLQACQALGPRLRDSQIYGFEM WAKEYRGDLGIALSDVYGMDAFLNDFDMYFCKLFDGARHDSGDPFEWGERMLRHYEANRCDPRTKVLVFSDALDIPKVMQ LYERFRGRCKLAFGVGTNLTNDLGYVPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGIAQPVDEDASK >Mature_399_residues MIITSLLDTDLYKFTMMQVVLHHFPAANVEYRFRCRTPGVDLVPYIDEIRDEVRGLCSLRFADVELDYLRRMRFIKSDFV DFLALFHLNEKYISITPSPKGNGEIDIVIEGPWLHTILFEIPVLAIVNEVYFRNTQREPDYREGRERLREKIKLLGAKPE FADCKIADYGTRRRFSKVWHEEVALTLRDGLGPQFAGTSNVLYAMKHDITPLGTMAHEYLQACQALGPRLRDSQIYGFEM WAKEYRGDLGIALSDVYGMDAFLNDFDMYFCKLFDGARHDSGDPFEWGERMLRHYEANRCDPRTKVLVFSDALDIPKVMQ LYERFRGRCKLAFGVGTNLTNDLGYVPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGIAQPVDEDASK
Specific function: NAD biosynthesis; nicotinamide to NaMN; second step. [C]
COG id: COG1488
COG function: function code H; Nicotinic acid phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAPRTase family [H]
Homologues:
Organism=Escherichia coli, GI1787162, Length=393, Percent_Identity=43.5114503816794, Blast_Score=326, Evalue=2e-90, Organism=Saccharomyces cerevisiae, GI6324783, Length=401, Percent_Identity=29.426433915212, Blast_Score=190, Evalue=3e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006406 - InterPro: IPR015977 - InterPro: IPR007229 - InterPro: IPR002638 [H]
Pfam domain/function: PF04095 NAPRTase [H]
EC number: =2.4.2.11 [H]
Molecular weight: Translated: 46003; Mature: 46003
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIITSLLDTDLYKFTMMQVVLHHFPAANVEYRFRCRTPGVDLVPYIDEIRDEVRGLCSLR CEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH FADVELDYLRRMRFIKSDFVDFLALFHLNEKYISITPSPKGNGEIDIVIEGPWLHTILFE EECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHH IPVLAIVNEVYFRNTQREPDYREGRERLREKIKLLGAKPEFADCKIADYGTRRRFSKVWH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH EEVALTLRDGLGPQFAGTSNVLYAMKHDITPLGTMAHEYLQACQALGPRLRDSQIYGFEM HHHHHHHHHCCCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WAKEYRGDLGIALSDVYGMDAFLNDFDMYFCKLFDGARHDSGDPFEWGERMLRHYEANRC HHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC DPRTKVLVFSDALDIPKVMQLYERFRGRCKLAFGVGTNLTNDLGYVPLQIVIKMVRCNGQ CCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC PVAKLSDSPGKSMCDDKAYLAYLRQVFGIAQPVDEDASK CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MIITSLLDTDLYKFTMMQVVLHHFPAANVEYRFRCRTPGVDLVPYIDEIRDEVRGLCSLR CEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH FADVELDYLRRMRFIKSDFVDFLALFHLNEKYISITPSPKGNGEIDIVIEGPWLHTILFE EECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHH IPVLAIVNEVYFRNTQREPDYREGRERLREKIKLLGAKPEFADCKIADYGTRRRFSKVWH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH EEVALTLRDGLGPQFAGTSNVLYAMKHDITPLGTMAHEYLQACQALGPRLRDSQIYGFEM HHHHHHHHHCCCCCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WAKEYRGDLGIALSDVYGMDAFLNDFDMYFCKLFDGARHDSGDPFEWGERMLRHYEANRC HHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC DPRTKVLVFSDALDIPKVMQLYERFRGRCKLAFGVGTNLTNDLGYVPLQIVIKMVRCNGQ CCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC PVAKLSDSPGKSMCDDKAYLAYLRQVFGIAQPVDEDASK CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA