| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is yjgA [C]
Identifier: 116689103
GI number: 116689103
Start: 1191770
End: 1192381
Strand: Reverse
Name: yjgA [C]
Synonym: Bcen2424_1080
Alternate gene names: 116689103
Gene position: 1192381-1191770 (Counterclockwise)
Preceding gene: 116689105
Following gene: 116689102
Centisome position: 34.23
GC content: 67.32
Gene sequence:
>612_bases ATGCCGCCCATGACACGCAAAACCCGAATCCAGCCGATCGAGCCTGTCGCCGAAGAAGACGACAACGGCTACGATCGCCC CAGCAAATCCCAGTTGAAGCGCGAAATGCACGAGCTGCAGGTGCTCGGTCAGGCGCTCGTCGACCTGCCGAAAGACGCAC TGAAGCGCATGCCGATGCCCGAAAGTCTCGGGGACGCCGTGCGCGAGGCCCGCCGGATCACCGATCACGAAGGCAAGCGC CGCCAGCTTCAGTACGTCGGCCGCGTGATGCGCTCGCTGACCGACGACGAAACGGCCGCGCTGCGCACCGCGCTCGACGC GCAACGCGGCGTGAACAAGGCCGCCACCGCCCGCCTGCACTGGATCGAGCGCACGCGCGAGCAACTGCTCGCGAGCGACG ACGCGCTGACCGAATTCCTGCGCCAGCACCCCGACGCCGACATCCAGGAAGGCCGCACGCTGATCCGCAACGCGCGCAAG GAAGCGCAGCAAGGCAAGCCGCCGCGCTATTTCCGCGAGCTGTTCCAGTGGATCAAGGCCGCAGGCGGCGCGTCCGACAG CGACGACGAAGCGGCCGACGACGCCGGAGACGACCATGACGACGAAGCGTAA
Upstream 100 bases:
>100_bases CGGGCGGGCGCCCGCATGGTCAAAATGTTGCGTATCCCGCGATCATAGCAAGGTCCGGGGCCGGACACAGACAAGCTTGG GGTGTCCGCGCCGCGATACA
Downstream 100 bases:
>100_bases CCATCCGGACGAGCTCGTGGTCGGCCTCGTGTCGATCAGCGACCGCGCGAGTACGGGGGTCTACGAAGACAAGGGCATTC CGGCGCTGCAGGAATGGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MPPMTRKTRIQPIEPVAEEDDNGYDRPSKSQLKREMHELQVLGQALVDLPKDALKRMPMPESLGDAVREARRITDHEGKR RQLQYVGRVMRSLTDDETAALRTALDAQRGVNKAATARLHWIERTREQLLASDDALTEFLRQHPDADIQEGRTLIRNARK EAQQGKPPRYFRELFQWIKAAGGASDSDDEAADDAGDDHDDEA
Sequences:
>Translated_203_residues MPPMTRKTRIQPIEPVAEEDDNGYDRPSKSQLKREMHELQVLGQALVDLPKDALKRMPMPESLGDAVREARRITDHEGKR RQLQYVGRVMRSLTDDETAALRTALDAQRGVNKAATARLHWIERTREQLLASDDALTEFLRQHPDADIQEGRTLIRNARK EAQQGKPPRYFRELFQWIKAAGGASDSDDEAADDAGDDHDDEA >Mature_202_residues PPMTRKTRIQPIEPVAEEDDNGYDRPSKSQLKREMHELQVLGQALVDLPKDALKRMPMPESLGDAVREARRITDHEGKRR QLQYVGRVMRSLTDDETAALRTALDAQRGVNKAATARLHWIERTREQLLASDDALTEFLRQHPDADIQEGRTLIRNARKE AQQGKPPRYFRELFQWIKAAGGASDSDDEAADDAGDDHDDEA
Specific function: Unknown
COG id: COG3028
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0307 family [H]
Homologues:
Organism=Escherichia coli, GI1790681, Length=153, Percent_Identity=41.1764705882353, Blast_Score=107, Evalue=6e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023153 - InterPro: IPR006839 [H]
Pfam domain/function: PF04751 DUF615 [H]
EC number: NA
Molecular weight: Translated: 23064; Mature: 22933
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPMTRKTRIQPIEPVAEEDDNGYDRPSKSQLKREMHELQVLGQALVDLPKDALKRMPMP CCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC ESLGDAVREARRITDHEGKRRQLQYVGRVMRSLTDDETAALRTALDAQRGVNKAATARLH HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHH WIERTREQLLASDDALTEFLRQHPDADIQEGRTLIRNARKEAQQGKPPRYFRELFQWIKA HHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AGGASDSDDEAADDAGDDHDDEA HCCCCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure PPMTRKTRIQPIEPVAEEDDNGYDRPSKSQLKREMHELQVLGQALVDLPKDALKRMPMP CCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC ESLGDAVREARRITDHEGKRRQLQYVGRVMRSLTDDETAALRTALDAQRGVNKAATARLH HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHH WIERTREQLLASDDALTEFLRQHPDADIQEGRTLIRNARKEAQQGKPPRYFRELFQWIKA HHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AGGASDSDDEAADDAGDDHDDEA HCCCCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA