Click here to switch to the map view.

The map label for this gene is ykgD [C]

Identifier: 116688812

GI number: 116688812

Start: 894684

End: 895631

Strand: Direct

Name: ykgD [C]

Synonym: Bcen2424_0789

Alternate gene names: 116688812

Gene position: 894684-895631 (Clockwise)

Preceding gene: 116688808

Following gene: 116688813

Centisome position: 25.68

GC content: 71.62

Gene sequence:

>948_bases
ATGGATGCATTGAGTCAACTGCTGTCGCTGGGTCGCAGCCATGTCGAACTCGATGTGCGCTGTCTGCTCGACGGCCCGTT
CGCGATGCCGCACGACCCGCTGCCACCCGGCGAGGCGGCATTCCATCTGGTGCTGGCCGGAACCTGCCGGCTGCGTGCCG
CCGCTGGGCGCACGCTGCAACTCGCCGAGGGCGATTTCGTGCTGCTGCCCGCAGGCGGCGGGCACGATCTGCTCGACGCA
GGGGGCGGCCGCTCGAAGCCACTCGTGCCGTTGCGCGATTCGCGCGTCGGCGACGGCGCGGTGCTGCCGGTCAAGTCGAA
TCTCGATCCGGTCGAACCGCGCAGCGCGAGCGTGGATCTGCTCTGCGGACGGTTCGTCTATGCGCGCGGCGCGGGCGAAC
TGCTGATGCGTACGCTGCCGCAGGTGTTGCACGTCGGATTGCGCGACACCTCGGGGGCCGCGCCGCTGCAATTGCTGACG
AGTGTGCTGCGTACCGAGGCGTCGAACGTGCAGCCGGGTGCCGGCGCGATCGTGAATGCGCTCGGGCAGGCGCTGCTGGC
GTATGCGCTGCGCGCGTACGGTCGTGGTGCGCGCGTACCGTCCGGCTGGCTCGCGCTCGCGGCCGATGCGCGGCTGGGCC
CGTCGGTCCACGCCGTGCTGCAGGCGCCGGCGCAACCGTGGACCGTCGAATCGCTCGGCGCCGCGGCGGCGATGTCGCGC
GCGACCTACGCGCGGCATTTCCGCGAGAAGGCGGGGATGAGCGTCGGCGCGTTCGTCGCGCAGATCCGGATGATGCATGC
ATGCGCGCTGCTGCAGGACACGCAGCGCGGACAGGCGGAAATCGGCCAGGCGGTCGGCTACCAGTCCGAGGCCGCGTTCG
GCAAGGCGTTTCGCGCGGTGCTCGGCACGACGCCGGGGCGCTGGCGGCGCGCGCGGCGCGAAACGTGA

Upstream 100 bases:

>100_bases
GGCGGCGGGTGCCGCGATCTCGGGCGATGCAAGGCTATTCTGATCGCTCGCGCTGAGGGTTTCGATACGCTAGAGTGTCA
GTTTTTAGCGTAATCGTCTC

Downstream 100 bases:

>100_bases
GCATGCAATCGTGCCCGTCGTGACGCGCGCCAAAGCTGCTACCATGCGCGAAACGCAGTTCAACGAAAACGATTTCGAAC
AACAAGAAAGAGAGGGCAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGTCRLRAAAGRTLQLAEGDFVLLPAGGGHDLLDA
GGGRSKPLVPLRDSRVGDGAVLPVKSNLDPVEPRSASVDLLCGRFVYARGAGELLMRTLPQVLHVGLRDTSGAAPLQLLT
SVLRTEASNVQPGAGAIVNALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVHAVLQAPAQPWTVESLGAAAAMSR
ATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRARRET

Sequences:

>Translated_315_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGTCRLRAAAGRTLQLAEGDFVLLPAGGGHDLLDA
GGGRSKPLVPLRDSRVGDGAVLPVKSNLDPVEPRSASVDLLCGRFVYARGAGELLMRTLPQVLHVGLRDTSGAAPLQLLT
SVLRTEASNVQPGAGAIVNALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVHAVLQAPAQPWTVESLGAAAAMSR
ATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRARRET
>Mature_315_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGTCRLRAAAGRTLQLAEGDFVLLPAGGGHDLLDA
GGGRSKPLVPLRDSRVGDGAVLPVKSNLDPVEPRSASVDLLCGRFVYARGAGELLMRTLPQVLHVGLRDTSGAAPLQLLT
SVLRTEASNVQPGAGAIVNALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVHAVLQAPAQPWTVESLGAAAAMSR
ATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRARRET

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=315, Percent_Identity=26.3492063492064, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33067; Mature: 33067

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGTCRLRAAAGRTLQ
CHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHEEEEECCCHHHHHHCCCEEE
LAEGDFVLLPAGGGHDLLDAGGGRSKPLVPLRDSRVGDGAVLPVKSNLDPVEPRSASVDL
EECCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHH
LCGRFVYARGAGELLMRTLPQVLHVGLRDTSGAAPLQLLTSVLRTEASNVQPGAGAIVNA
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
LGQALLAYALRAYGRGARVPSGWLALAADARLGPSVHAVLQAPAQPWTVESLGAAAAMSR
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
ATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
LGTTPGRWRRARRET
HCCCCHHHHHHHCCC
>Mature Secondary Structure
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLVLAGTCRLRAAAGRTLQ
CHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHEEEEECCCHHHHHHCCCEEE
LAEGDFVLLPAGGGHDLLDAGGGRSKPLVPLRDSRVGDGAVLPVKSNLDPVEPRSASVDL
EECCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHH
LCGRFVYARGAGELLMRTLPQVLHVGLRDTSGAAPLQLLTSVLRTEASNVQPGAGAIVNA
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
LGQALLAYALRAYGRGARVPSGWLALAADARLGPSVHAVLQAPAQPWTVESLGAAAAMSR
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
ATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
LGTTPGRWRRARRET
HCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]