| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is rkpI [H]
Identifier: 116688804
GI number: 116688804
Start: 879657
End: 881195
Strand: Direct
Name: rkpI [H]
Synonym: Bcen2424_0781
Alternate gene names: 116688804
Gene position: 879657-881195 (Clockwise)
Preceding gene: 116688803
Following gene: 116688805
Centisome position: 25.25
GC content: 56.92
Gene sequence:
>1539_bases TTGAGTGGGGAACTTGCGACGCATGGTTTCGCAATTGCAGCGGCGCTGGTGTTGTCCTTTGTCGCGGATTTGGTGGCCCG CCCGCGAGGCGCGTGGCGTCGTCCGCCGGTTGCCATCTTGTTGCACGTATTCGCAGTTATATGCGTGTTTTGCGCGGCTT TCTCGCTAACTATTCGGCCGCTCTTTTCTGCGTTTGTTGCCGTTGCACTTGTCGGTCTTCTAGCTGCCGTGAGCAATGCG AAGTATGAGTCGTTGCTCGAGCCTTTCGTATTCACCGACCTCAGTCTGTTCAGCCAGCTTTTCTCCCATCCACGTCTCTA TCTGCCTTTCCTGAGTGCAGGCAAGGTGGCTGCGATTGCGGCCTGTGTGATGTTGCTAACGAGTGGCTACATGCTCGAGT CCCCGTCGTTTCCGAGCTTTCGCGGTGTTGCCATCGTGGCTGCGGCGATGTGTTTTCTGGGCGCGCGCTGGTTTGCCGCC CATCTTGCGCTGTCGCTTGTCGCGTCCGACGATCAGAATCGGTTCGGCTTTTTCTCGGTATTCGTCGCCTACTTGTTGAA TGGCCTGCGCGTTTCCACTATCCGAGAATTCGAGCGGCAGGCGGGGCTAGGGCCATTTGCCTCCGGTGCTCCGGCGACAC GCCCGGATGTCGTTGTGATCCAGAGCGAGTCCTTTTTTGACATTCGCAGAGCAGGACCGGCAATCAATCGCGATATTCTT TCTCGATTCGATCAGGCCTGCCGAGAGGCGCGTGTTTACGGTGAGCTGACCGTGCCAGCCTGGGGGGCGAACACAATGAG GACGGAGTTCGCGTTATTAACAGGATTGGGGGCGGATAGATTGGGTTATGCGCGTTTTTATCCGTATGCATTCGTGCGCC GGGCATGCGCATCGATTGCCAGCTGGTTCCGGAGAGGTGGCTACGCGACGGTCGCAATTCACCCGTACTATGCTGATTTT TTCGGCCGCGACCGCGTGTTTCCGTTGATGGGGTTCGAAAGGCTTGTCGGTATCGAGGCCTTTGCCGACGCGCCAAGGTT TGGGCCCTATGTGTCCGATTCTGCGGTCGCGGACGCGATTATTGAGACCTTGGACGAGCCGACTGACGGGCCGAAGTTCA TATTCGCGATGACGATGGAGAATCACGGCCCCTTCCATCTCGAAGCTTTGCCGGCGGGGGAAATGCATTTCCAGCACGCG CTTGGTACAGATCCGGTTTGGCGCGATCTTACCGTTTACCTGCGGCACATTGAAAATGCAGACGCAATGATTGGCCGCCT GCTCGACCATTTGCGCACCAGCGATCGTGAAACAGTCGTTTGTTTTTACGGCGATCACGTTCCCGCTCTGCCTCACGTAT TCGATAAGCTGGGCGTTTCCCCGCAAACCAGCGACTACTTCATTTGGCGAAATTACGGCACGGACACGCCCGAATGCCGG AATTTGGCAGCCGAAGAGCTTGGGTCGGTACTTTTGCATGTGGTACAAGATGACGGACATCGCGCGGAACAACCGCACGC ATCCGAGAAAGCGACATAA
Upstream 100 bases:
>100_bases ATGCTTGCGGTGGGCATGCGACTACTTAACGTTTTACCGGTGCGGATCGCAGACGCCATCCTGTCACGCTTGTCCTACAT TCCACGAGAGGGGCAATAGC
Downstream 100 bases:
>100_bases AAGATGAACAGTAAGATTGCAATAATTGGGGTGGCTTGTCGGTTTCCCGGGAGCGCGAACAATCTTGGCGACTTCTGGCA ACTGCTGCGCGACGAACGCG
Product: sulfatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 512; Mature: 511
Protein sequence:
>512_residues MSGELATHGFAIAAALVLSFVADLVARPRGAWRRPPVAILLHVFAVICVFCAAFSLTIRPLFSAFVAVALVGLLAAVSNA KYESLLEPFVFTDLSLFSQLFSHPRLYLPFLSAGKVAAIAACVMLLTSGYMLESPSFPSFRGVAIVAAAMCFLGARWFAA HLALSLVASDDQNRFGFFSVFVAYLLNGLRVSTIREFERQAGLGPFASGAPATRPDVVVIQSESFFDIRRAGPAINRDIL SRFDQACREARVYGELTVPAWGANTMRTEFALLTGLGADRLGYARFYPYAFVRRACASIASWFRRGGYATVAIHPYYADF FGRDRVFPLMGFERLVGIEAFADAPRFGPYVSDSAVADAIIETLDEPTDGPKFIFAMTMENHGPFHLEALPAGEMHFQHA LGTDPVWRDLTVYLRHIENADAMIGRLLDHLRTSDRETVVCFYGDHVPALPHVFDKLGVSPQTSDYFIWRNYGTDTPECR NLAAEELGSVLLHVVQDDGHRAEQPHASEKAT
Sequences:
>Translated_512_residues MSGELATHGFAIAAALVLSFVADLVARPRGAWRRPPVAILLHVFAVICVFCAAFSLTIRPLFSAFVAVALVGLLAAVSNA KYESLLEPFVFTDLSLFSQLFSHPRLYLPFLSAGKVAAIAACVMLLTSGYMLESPSFPSFRGVAIVAAAMCFLGARWFAA HLALSLVASDDQNRFGFFSVFVAYLLNGLRVSTIREFERQAGLGPFASGAPATRPDVVVIQSESFFDIRRAGPAINRDIL SRFDQACREARVYGELTVPAWGANTMRTEFALLTGLGADRLGYARFYPYAFVRRACASIASWFRRGGYATVAIHPYYADF FGRDRVFPLMGFERLVGIEAFADAPRFGPYVSDSAVADAIIETLDEPTDGPKFIFAMTMENHGPFHLEALPAGEMHFQHA LGTDPVWRDLTVYLRHIENADAMIGRLLDHLRTSDRETVVCFYGDHVPALPHVFDKLGVSPQTSDYFIWRNYGTDTPECR NLAAEELGSVLLHVVQDDGHRAEQPHASEKAT >Mature_511_residues SGELATHGFAIAAALVLSFVADLVARPRGAWRRPPVAILLHVFAVICVFCAAFSLTIRPLFSAFVAVALVGLLAAVSNAK YESLLEPFVFTDLSLFSQLFSHPRLYLPFLSAGKVAAIAACVMLLTSGYMLESPSFPSFRGVAIVAAAMCFLGARWFAAH LALSLVASDDQNRFGFFSVFVAYLLNGLRVSTIREFERQAGLGPFASGAPATRPDVVVIQSESFFDIRRAGPAINRDILS RFDQACREARVYGELTVPAWGANTMRTEFALLTGLGADRLGYARFYPYAFVRRACASIASWFRRGGYATVAIHPYYADFF GRDRVFPLMGFERLVGIEAFADAPRFGPYVSDSAVADAIIETLDEPTDGPKFIFAMTMENHGPFHLEALPAGEMHFQHAL GTDPVWRDLTVYLRHIENADAMIGRLLDHLRTSDRETVVCFYGDHVPALPHVFDKLGVSPQTSDYFIWRNYGTDTPECRN LAAEELGSVLLHVVQDDGHRAEQPHASEKAT
Specific function: Involved in antigen K (capsular polysaccharide) biosynthesis [H]
COG id: COG1368
COG function: function code M; Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 56330; Mature: 56199
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGELATHGFAIAAALVLSFVADLVARPRGAWRRPPVAILLHVFAVICVFCAAFSLTIRP CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LFSAFVAVALVGLLAAVSNAKYESLLEPFVFTDLSLFSQLFSHPRLYLPFLSAGKVAAIA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH ACVMLLTSGYMLESPSFPSFRGVAIVAAAMCFLGARWFAAHLALSLVASDDQNRFGFFSV HHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH FVAYLLNGLRVSTIREFERQAGLGPFASGAPATRPDVVVIQSESFFDIRRAGPAINRDIL HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHH SRFDQACREARVYGELTVPAWGANTMRTEFALLTGLGADRLGYARFYPYAFVRRACASIA HHHHHHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH SWFRRGGYATVAIHPYYADFFGRDRVFPLMGFERLVGIEAFADAPRFGPYVSDSAVADAI HHHHCCCEEEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH IETLDEPTDGPKFIFAMTMENHGPFHLEALPAGEMHFQHALGTDPVWRDLTVYLRHIENA HHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHCCH DAMIGRLLDHLRTSDRETVVCFYGDHVPALPHVFDKLGVSPQTSDYFIWRNYGTDTPECR HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH NLAAEELGSVLLHVVQDDGHRAEQPHASEKAT HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SGELATHGFAIAAALVLSFVADLVARPRGAWRRPPVAILLHVFAVICVFCAAFSLTIRP CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LFSAFVAVALVGLLAAVSNAKYESLLEPFVFTDLSLFSQLFSHPRLYLPFLSAGKVAAIA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH ACVMLLTSGYMLESPSFPSFRGVAIVAAAMCFLGARWFAAHLALSLVASDDQNRFGFFSV HHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH FVAYLLNGLRVSTIREFERQAGLGPFASGAPATRPDVVVIQSESFFDIRRAGPAINRDIL HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHH SRFDQACREARVYGELTVPAWGANTMRTEFALLTGLGADRLGYARFYPYAFVRRACASIA HHHHHHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH SWFRRGGYATVAIHPYYADFFGRDRVFPLMGFERLVGIEAFADAPRFGPYVSDSAVADAI HHHHCCCEEEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH IETLDEPTDGPKFIFAMTMENHGPFHLEALPAGEMHFQHALGTDPVWRDLTVYLRHIENA HHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHCCH DAMIGRLLDHLRTSDRETVVCFYGDHVPALPHVFDKLGVSPQTSDYFIWRNYGTDTPECR HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH NLAAEELGSVLLHVVQDDGHRAEQPHASEKAT HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9079896; 11481430 [H]