| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is engD [H]
Identifier: 116688548
GI number: 116688548
Start: 583720
End: 584814
Strand: Reverse
Name: engD [H]
Synonym: Bcen2424_0524
Alternate gene names: 116688548
Gene position: 584814-583720 (Counterclockwise)
Preceding gene: 116688553
Following gene: 116688543
Centisome position: 16.79
GC content: 64.11
Gene sequence:
>1095_bases ATGAGTCTCAAATGCGGCATCGTCGGCTTGCCCAACGTCGGCAAGTCCACCCTGTTCAATGCGCTGACCAAGGCCGGCAT CGCCGCCGAGAACTACCCGTTCTGCACGATCGAGCCGAACGTCGGCATCGTCGAAGTGCCCGATACGCGCCTGAAGGCGC TCTCCGAGATCGTCAAGCCGGAGCGTGTCGTGCCGGCCGTCGTCGAATTCGTCGACATCGCGGGCCTCGTCGCGGGCGCA AGCAAGGGTGAAGGCCTCGGCAACCAGTTCCTCGCGAACATCCGCGAAACCGATGCGATCACGCACGTCGTGCGCTGCTT CGAGGACGACAACGTCATTCACGTCGCCGGCAAGGTCAGCCCGATCGACGACATCGAAGTGATCAACACCGAACTCGCAC TCGCCGACCTCGGCACCATCGAGAAGGCGCTCACGCGCTATTCGAAGGCGGCGAAGTCGGGCAACGACAAGGAAGCGGCG AAGCTCGTCGCGGTGCTCGAAAAGGTGCGCGCGCAGCTCGACCAGGGCAAGGCCGTGCGCGGCCTCGCGCTGTCGGACGA CGAACAGGCGCTGATCAAGCCGTTCTGCCTGATCACCGCGAAGCCGGCGATGTACGTCGCCAACGTGAAGGACGACGGCT TCGAGAACAACCCGCACCTCGAGGCGGTGCGCAAGTACGCGGAAAGCGAAAACGCGCCGGTGGTCGCCGTATGCGCGGCG ATCGAGGCGGAAATCGCCGATCTCGACGACGCGGACAAGGAAGCGTTCCTCGCCGACATGGGCATGGAAGAACCGGGCCT CGACCGCGTGATTCGCGCGGGCTTCAAGCTGCTCGGCCTGCAGACCTATTTCACCGCCGGCGTGAAGGAAGTGCGCGCGT GGACGATCCACATCGGCGATACCGCTCCGCAAGCGGCCGGCGTGATCCACACCGACTTCGAGCGCGGCTTCATCCGTGCG CAGACGATCGCGTTCGACGACTTCGTCACGTACAAGGGCGAGCAAGGCGCGAAGGAAGCCGGCAAGATGCGCGCGGAAGG GAAGGAATACGTCGTGCACGACGGCGACGTGATGAACTTCCTGTTCAACGTCTGA
Upstream 100 bases:
>100_bases TTGACCGTCGGCCCGCCGCGCTCCACGCGCCGGCCGCCCCTTTTTTCCCGCGCCGCCGTGCCCTGTCCGGCCGCGCCGCC TCACCCGTCCGAAGGATTCC
Downstream 100 bases:
>100_bases GCGAATCACCCCAGGCGTAGTACGGCAATACACGGAAAACCCCTTGCGGCCTTGGCGCCGCAAGGGGTTTTCTGTTTCAT GCGCCCGGCATCGTTCCGCT
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDTRLKALSEIVKPERVVPAVVEFVDIAGLVAGA SKGEGLGNQFLANIRETDAITHVVRCFEDDNVIHVAGKVSPIDDIEVINTELALADLGTIEKALTRYSKAAKSGNDKEAA KLVAVLEKVRAQLDQGKAVRGLALSDDEQALIKPFCLITAKPAMYVANVKDDGFENNPHLEAVRKYAESENAPVVAVCAA IEAEIADLDDADKEAFLADMGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRA QTIAFDDFVTYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV
Sequences:
>Translated_364_residues MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDTRLKALSEIVKPERVVPAVVEFVDIAGLVAGA SKGEGLGNQFLANIRETDAITHVVRCFEDDNVIHVAGKVSPIDDIEVINTELALADLGTIEKALTRYSKAAKSGNDKEAA KLVAVLEKVRAQLDQGKAVRGLALSDDEQALIKPFCLITAKPAMYVANVKDDGFENNPHLEAVRKYAESENAPVVAVCAA IEAEIADLDDADKEAFLADMGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRA QTIAFDDFVTYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV >Mature_363_residues SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDTRLKALSEIVKPERVVPAVVEFVDIAGLVAGAS KGEGLGNQFLANIRETDAITHVVRCFEDDNVIHVAGKVSPIDDIEVINTELALADLGTIEKALTRYSKAAKSGNDKEAAK LVAVLEKVRAQLDQGKAVRGLALSDDEQALIKPFCLITAKPAMYVANVKDDGFENNPHLEAVRKYAESENAPVVAVCAAI EAEIADLDDADKEAFLADMGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRAQ TIAFDDFVTYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=43.0894308943089, Blast_Score=299, Evalue=2e-81, Organism=Homo sapiens, GI58761502, Length=227, Percent_Identity=35.2422907488987, Blast_Score=144, Evalue=2e-34, Organism=Escherichia coli, GI1787454, Length=364, Percent_Identity=70.6043956043956, Blast_Score=534, Evalue=1e-153, Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=29.1338582677165, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=40.9836065573771, Blast_Score=290, Evalue=9e-79, Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=39.8373983739837, Blast_Score=250, Evalue=2e-67, Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=34.0369393139842, Blast_Score=196, Evalue=5e-51, Organism=Saccharomyces cerevisiae, GI6321649, Length=167, Percent_Identity=37.7245508982036, Blast_Score=89, Evalue=1e-18, Organism=Drosophila melanogaster, GI24640873, Length=367, Percent_Identity=41.6893732970027, Blast_Score=290, Evalue=1e-78, Organism=Drosophila melanogaster, GI24640877, Length=367, Percent_Identity=41.6893732970027, Blast_Score=290, Evalue=1e-78, Organism=Drosophila melanogaster, GI24640875, Length=367, Percent_Identity=41.6893732970027, Blast_Score=290, Evalue=1e-78, Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=39.0769230769231, Blast_Score=231, Evalue=4e-61, Organism=Drosophila melanogaster, GI24585318, Length=178, Percent_Identity=28.0898876404494, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39162; Mature: 39031
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDTRLKALSEIVKP CCCEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHHCC ERVVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDDNVIHVAGKVS HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC PIDDIEVINTELALADLGTIEKALTRYSKAAKSGNDKEAAKLVAVLEKVRAQLDQGKAVR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEE GLALSDDEQALIKPFCLITAKPAMYVANVKDDGFENNPHLEAVRKYAESENAPVVAVCAA CEEECCCCHHHHHHEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH IEAEIADLDDADKEAFLADMGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGD HHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC TAPQAAGVIHTDFERGFIRAQTIAFDDFVTYKGEQGAKEAGKMRAEGKEYVVHDGDVMNF CCCCCCCCEEECCCCCEEEEEEEEEEHHEEECCCCCHHHHHHHHCCCCEEEEECCHHHHH LFNV HHCC >Mature Secondary Structure SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDTRLKALSEIVKP CCEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHHCC ERVVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDDNVIHVAGKVS HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC PIDDIEVINTELALADLGTIEKALTRYSKAAKSGNDKEAAKLVAVLEKVRAQLDQGKAVR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEE GLALSDDEQALIKPFCLITAKPAMYVANVKDDGFENNPHLEAVRKYAESENAPVVAVCAA CEEECCCCHHHHHHEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH IEAEIADLDDADKEAFLADMGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGD HHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC TAPQAAGVIHTDFERGFIRAQTIAFDDFVTYKGEQGAKEAGKMRAEGKEYVVHDGDVMNF CCCCCCCCEEECCCCCEEEEEEEEEEHHEEECCCCCHHHHHHHHCCCCEEEEECCHHHHH LFNV HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]